dbCAN HGM

Cluster: Rep_2208_CGC11

Gene Type	Contig ID	Protein ID	Start	Stop	Direction	Protein Family
TC	Rep_2208_c_1	Rep_2208_c_1_120	132273	133169	-	3.A.1.1.29
TC	Rep_2208_c_1	Rep_2208_c_1_121	133181	134122	-	3.A.1.1.29
TC	Rep_2208_c_1	Rep_2208_c_1_122	134227	135966	-	3.A.1.1.29
TC	Rep_2208_c_1	Rep_2208_c_1_123	136161	138215	-	1.B.52.2.2
TF	Rep_2208_c_1	Rep_2208_c_1_124	138469	140064	-	HTH_AraC \| HTH_AraC
TC	Rep_2208_c_1	Rep_2208_c_1_125	140096	141856	-	9.B.33.1.1
CAZyme	Rep_2208_c_1	Rep_2208_c_1_126	141934	143100	-	GH8

Gene ID: Rep_2208_c_1_120
Type: TC
Location: 132273 - 133169 (-)

Gene ID: Rep_2208_c_1_121
Type: TC
Location: 133181 - 134122 (-)

Gene ID: Rep_2208_c_1_122
Type: TC
Location: 134227 - 135966 (-)

Gene ID: Rep_2208_c_1_123
Type: TC
Location: 136161 - 138215 (-)

Gene ID: Rep_2208_c_1_124
Type: TF
Location: 138469 - 140064 (-)

Gene ID: Rep_2208_c_1_125
Type: TC
Location: 140096 - 141856 (-)

Gene ID: Rep_2208_c_1_126
Type: CAZyme
Location: 141934 - 143100 (-)

Taxonomic Lineage

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Gene Level Read Mapping

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Gene ID	Condition Pair	log2FC	FDR P-value
Rep_2208_c_1_120	vegetarian > omnivore	1.57148	0.00588
Rep_2208_c_1_123	vegetarian > omnivore	1.57954	0.00588
Rep_2208_c_1_123	vegetarian > vegan	1.33978	0.00052
Rep_2208_c_1_124	vegetarian > vegan	1.87146	0.00052
Rep_2208_c_1_125	vegetarian > vegan	1.48826	0.00052
Rep_2208_c_1_126	vegetarian > vegan	2.00052	0.00052