Cluster: Rep_2208_CGC1
🧬 Cluster Details
- Gene Count: 9
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_2208
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_2208_c_0 | Rep_2208_c_0_7 | 8972 | 10009 | + | GT2 |
| pfam | Rep_2208_c_0 | Rep_2208_c_0_8 | 10009 | 11814 | + | DUF6020 |
| NULL(UNKNOWN) | Rep_2208_c_0 | Rep_2208_c_0_9 | 11858 | 14398 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | Rep_2208_c_0 | Rep_2208_c_0_10 | 14400 | 16283 | + | 9.B.18.2.1 |
| STP | Rep_2208_c_0 | Rep_2208_c_0_11 | 16553 | 17728 | + | Aminotran_1_2 |
| TC | Rep_2208_c_0 | Rep_2208_c_0_12 | 18039 | 18671 | + | 9.B.18.1.3 |
| STP | Rep_2208_c_0 | Rep_2208_c_0_13 | 18672 | 19640 | + | PALP |
| pfam | Rep_2208_c_0 | Rep_2208_c_0_14 | 19637 | 20617 | + | ATP-grasp_3 | Dala_Dala_lig_C | ATPgrasp_Ter | PylC-like_N |
| CAZyme | Rep_2208_c_0 | Rep_2208_c_0_15 | 20735 | 21817 | + | GT4 |
Gene ID: Rep_2208_c_0_7
Type: CAZyme
Location: 8972 - 10009 (+)
Type: CAZyme
Location: 8972 - 10009 (+)
Gene ID: Rep_2208_c_0_8
Type: pfam
Location: 10009 - 11814 (+)
Type: pfam
Location: 10009 - 11814 (+)
Gene ID: Rep_2208_c_0_9
Type:
Location: 11858 - 14398 (+)
Type:
Location: 11858 - 14398 (+)
Gene ID: Rep_2208_c_0_10
Type: TC
Location: 14400 - 16283 (+)
Type: TC
Location: 14400 - 16283 (+)
Gene ID: Rep_2208_c_0_11
Type: STP
Location: 16553 - 17728 (+)
Type: STP
Location: 16553 - 17728 (+)
Gene ID: Rep_2208_c_0_12
Type: TC
Location: 18039 - 18671 (+)
Type: TC
Location: 18039 - 18671 (+)
Gene ID: Rep_2208_c_0_13
Type: STP
Location: 18672 - 19640 (+)
Type: STP
Location: 18672 - 19640 (+)
Gene ID: Rep_2208_c_0_14
Type: pfam
Location: 19637 - 20617 (+)
Type: pfam
Location: 19637 - 20617 (+)
Gene ID: Rep_2208_c_0_15
Type: CAZyme
Location: 20735 - 21817 (+)
Type: CAZyme
Location: 20735 - 21817 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Suilimivivens
Species
Suilimivivens sp000438155
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_2208_c_0_7 | vegetarian > vegan | 1.06007 | 0.00052 |
| Rep_2208_c_0_8 | vegetarian > vegan | 1.04062 | 0.00052 |
| Rep_2208_c_0_11 | vegetarian > vegan | 1.39352 | 0.00052 |
| Rep_2208_c_0_12 | vegetarian > omnivore | 1.41322 | 0.00588 |
| Rep_2208_c_0_13 | vegetarian > omnivore | 1.68836 | 0.00588 |
| Rep_2208_c_0_14 | vegetarian > omnivore | 1.52667 | 0.00588 |