Cluster: Rep_2205_CGC9
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 3
- Substrate:
- Genome ID: Rep_2205
- CGC Family ID: CGCFAM_00806
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_2205_c_1 | Rep_2205_c_1_126 | 166143 | 167039 | + | 3.A.1.1.20 |
| TC | Rep_2205_c_1 | Rep_2205_c_1_127 | 167058 | 167936 | + | 3.A.1.1.36 |
| CAZyme | Rep_2205_c_1 | Rep_2205_c_1_128 | 167944 | 170211 | + | GH65 |
| CAZyme | Rep_2205_c_1 | Rep_2205_c_1_129 | 170223 | 172394 | + | GH65 |
| TF | Rep_2205_c_1 | Rep_2205_c_1_130 | 172378 | 173391 | - | LacI |
| pfam | Rep_2205_c_1 | Rep_2205_c_1_131 | 173542 | 174189 | + | Hydrolase | Hydrolase_like | HAD_2 |
| CAZyme | Rep_2205_c_1 | Rep_2205_c_1_132 | 174233 | 175795 | + | GH28 |
| pfam | Rep_2205_c_1 | Rep_2205_c_1_133 | 175820 | 176449 | + | F5_F8_type_C | F5_F8_type_C_2 |
| TC | Rep_2205_c_1 | Rep_2205_c_1_134 | 176499 | 178685 | + | 1.B.52.2.2 |
| TF | Rep_2205_c_1 | Rep_2205_c_1_135 | 179682 | 180575 | + | HTH_1 |
| TC | Rep_2205_c_1 | Rep_2205_c_1_136 | 180572 | 181954 | - | 2.A.66.1.26 |
Gene ID: Rep_2205_c_1_126
Type: TC
Location: 166143 - 167039 (+)
Type: TC
Location: 166143 - 167039 (+)
Gene ID: Rep_2205_c_1_127
Type: TC
Location: 167058 - 167936 (+)
Type: TC
Location: 167058 - 167936 (+)
Gene ID: Rep_2205_c_1_128
Type: CAZyme
Location: 167944 - 170211 (+)
Type: CAZyme
Location: 167944 - 170211 (+)
Gene ID: Rep_2205_c_1_129
Type: CAZyme
Location: 170223 - 172394 (+)
Type: CAZyme
Location: 170223 - 172394 (+)
Gene ID: Rep_2205_c_1_130
Type: TF
Location: 172378 - 173391 (-)
Type: TF
Location: 172378 - 173391 (-)
Gene ID: Rep_2205_c_1_131
Type: pfam
Location: 173542 - 174189 (+)
Type: pfam
Location: 173542 - 174189 (+)
Gene ID: Rep_2205_c_1_132
Type: CAZyme
Location: 174233 - 175795 (+)
Type: CAZyme
Location: 174233 - 175795 (+)
Gene ID: Rep_2205_c_1_133
Type: pfam
Location: 175820 - 176449 (+)
Type: pfam
Location: 175820 - 176449 (+)
Gene ID: Rep_2205_c_1_134
Type: TC
Location: 176499 - 178685 (+)
Type: TC
Location: 176499 - 178685 (+)
Gene ID: Rep_2205_c_1_135
Type: TF
Location: 179682 - 180575 (+)
Type: TF
Location: 179682 - 180575 (+)
Gene ID: Rep_2205_c_1_136
Type: TC
Location: 180572 - 181954 (-)
Type: TC
Location: 180572 - 181954 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
UMGS2037
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_2205_c_1_135 | vegetarian > vegan | 1.64635 | 0.01057 |