Cluster: Rep_2205_CGC7
🧬 Cluster Details
- Gene Count: 18
- CAZyme Count: 7
- Substrate:
- Genome ID: Rep_2205
- CGC Family ID: CGCFAM_00168
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_2205_c_1 | Rep_2205_c_1_21 | 28770 | 29111 | + | 2.A.7.33.5 |
| NULL(UNKNOWN) | Rep_2205_c_1 | Rep_2205_c_1_22 | 29077 | 29358 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_2205_c_1 | Rep_2205_c_1_23 | 29744 | 32980 | + | GH25 |
| pfam | Rep_2205_c_1 | Rep_2205_c_1_24 | 33153 | 34238 | + | 3Beta_HSD | Epimerase | Polysacc_synt_2 | RmlD_sub_bind | NAD_binding_4 | GDP_Man_Dehyd |
| pfam | Rep_2205_c_1 | Rep_2205_c_1_25 | 34280 | 35149 | + | NTP_transferase | NTP_transf_3 |
| CAZyme | Rep_2205_c_1 | Rep_2205_c_1_26 | 35139 | 36437 | + | GH25 |
| pfam | Rep_2205_c_1 | Rep_2205_c_1_27 | 36622 | 37185 | + | dTDP_sugar_isom |
| TC | Rep_2205_c_1 | Rep_2205_c_1_28 | 37205 | 38212 | + | 3.A.1.104.1 |
| TC | Rep_2205_c_1 | Rep_2205_c_1_29 | 38262 | 39566 | + | 3.A.1.103.6 |
| pfam | Rep_2205_c_1 | Rep_2205_c_1_30 | 39623 | 41743 | + | PCMT | CMAS | Methyltransf_11 | Methyltransf_12 | Methyltransf_23 | Methyltransf_25 | Methyltransf_31 |
| CAZyme | Rep_2205_c_1 | Rep_2205_c_1_31 | 41813 | 43993 | + | GT2 |
| CAZyme | Rep_2205_c_1 | Rep_2205_c_1_32 | 44059 | 46041 | + | GT2 | GT2 |
| pfam | Rep_2205_c_1 | Rep_2205_c_1_33 | 46430 | 48151 | + | PGM_PMM_I | PGM_PMM_II | PGM_PMM_III |
| CAZyme | Rep_2205_c_1 | Rep_2205_c_1_34 | 48247 | 49680 | + | GT2 |
| CAZyme | Rep_2205_c_1 | Rep_2205_c_1_35 | 49684 | 50664 | + | GT2 |
| TC | Rep_2205_c_1 | Rep_2205_c_1_36 | 50747 | 52156 | + | 9.B.18.1.1 |
| pfam | Rep_2205_c_1 | Rep_2205_c_1_37 | 52234 | 53466 | + | LytR_cpsA_psr |
| CAZyme | Rep_2205_c_1 | Rep_2205_c_1_38 | 53551 | 54510 | + | GT2 |
Gene ID: Rep_2205_c_1_21
Type: TC
Location: 28770 - 29111 (+)
Type: TC
Location: 28770 - 29111 (+)
Gene ID: Rep_2205_c_1_22
Type:
Location: 29077 - 29358 (-)
Type:
Location: 29077 - 29358 (-)
Gene ID: Rep_2205_c_1_23
Type: CAZyme
Location: 29744 - 32980 (+)
Type: CAZyme
Location: 29744 - 32980 (+)
Gene ID: Rep_2205_c_1_24
Type: pfam
Location: 33153 - 34238 (+)
Type: pfam
Location: 33153 - 34238 (+)
Gene ID: Rep_2205_c_1_25
Type: pfam
Location: 34280 - 35149 (+)
Type: pfam
Location: 34280 - 35149 (+)
Gene ID: Rep_2205_c_1_26
Type: CAZyme
Location: 35139 - 36437 (+)
Type: CAZyme
Location: 35139 - 36437 (+)
Gene ID: Rep_2205_c_1_27
Type: pfam
Location: 36622 - 37185 (+)
Type: pfam
Location: 36622 - 37185 (+)
Gene ID: Rep_2205_c_1_28
Type: TC
Location: 37205 - 38212 (+)
Type: TC
Location: 37205 - 38212 (+)
Gene ID: Rep_2205_c_1_29
Type: TC
Location: 38262 - 39566 (+)
Type: TC
Location: 38262 - 39566 (+)
Gene ID: Rep_2205_c_1_30
Type: pfam
Location: 39623 - 41743 (+)
Type: pfam
Location: 39623 - 41743 (+)
Gene ID: Rep_2205_c_1_31
Type: CAZyme
Location: 41813 - 43993 (+)
Type: CAZyme
Location: 41813 - 43993 (+)
Gene ID: Rep_2205_c_1_32
Type: CAZyme
Location: 44059 - 46041 (+)
Type: CAZyme
Location: 44059 - 46041 (+)
Gene ID: Rep_2205_c_1_33
Type: pfam
Location: 46430 - 48151 (+)
Type: pfam
Location: 46430 - 48151 (+)
Gene ID: Rep_2205_c_1_34
Type: CAZyme
Location: 48247 - 49680 (+)
Type: CAZyme
Location: 48247 - 49680 (+)
Gene ID: Rep_2205_c_1_35
Type: CAZyme
Location: 49684 - 50664 (+)
Type: CAZyme
Location: 49684 - 50664 (+)
Gene ID: Rep_2205_c_1_36
Type: TC
Location: 50747 - 52156 (+)
Type: TC
Location: 50747 - 52156 (+)
Gene ID: Rep_2205_c_1_37
Type: pfam
Location: 52234 - 53466 (+)
Type: pfam
Location: 52234 - 53466 (+)
Gene ID: Rep_2205_c_1_38
Type: CAZyme
Location: 53551 - 54510 (+)
Type: CAZyme
Location: 53551 - 54510 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
UMGS2037
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.