Cluster: Rep_2205_CGC42
🧬 Cluster Details
- Gene Count: 15
- CAZyme Count: 4
- Substrate:
- Genome ID: Rep_2205
- CGC Family ID: CGCFAM_03929
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_2205_c_29 | Rep_2205_c_29_358 | 396304 | 398718 | - | 8.A.59.4.1 |
| CAZyme | Rep_2205_c_29 | Rep_2205_c_29_359 | 398874 | 400256 | - | GH30_1 |
| CAZyme | Rep_2205_c_29 | Rep_2205_c_29_360 | 400277 | 402901 | - | GH3 |
| pfam | Rep_2205_c_29 | Rep_2205_c_29_361 | 403228 | 403779 | - | Flavin_Reduct |
| CAZyme | Rep_2205_c_29 | Rep_2205_c_29_362 | 404409 | 405737 | - | GH32 |
| CAZyme | Rep_2205_c_29 | Rep_2205_c_29_363 | 405828 | 407279 | - | GH13_18 |
| TF | Rep_2205_c_29 | Rep_2205_c_29_364 | 407349 | 408335 | - | LacI |
| TC | Rep_2205_c_29 | Rep_2205_c_29_365 | 408442 | 409314 | - | 3.A.1.1.45 |
| TC | Rep_2205_c_29 | Rep_2205_c_29_366 | 409314 | 410183 | - | 3.A.1.1.45 |
| NULL(UNKNOWN) | Rep_2205_c_29 | Rep_2205_c_29_367 | 410246 | 411625 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | Rep_2205_c_29 | Rep_2205_c_29_368 | 411921 | 412874 | + | 8.A.5.1.4 |
| pfam | Rep_2205_c_29 | Rep_2205_c_29_369 | 412946 | 413800 | + | F_bP_aldolase |
| STP | Rep_2205_c_29 | Rep_2205_c_29_370 | 413826 | 414815 | + | PfkB |
| TC | Rep_2205_c_29 | Rep_2205_c_29_371 | 414896 | 416101 | + | 2.A.1.65.8 |
| TC | Rep_2205_c_29 | Rep_2205_c_29_372 | 416124 | 417500 | + | 2.A.66.1.33 |
Gene ID: Rep_2205_c_29_358
Type: TC
Location: 396304 - 398718 (-)
Type: TC
Location: 396304 - 398718 (-)
Gene ID: Rep_2205_c_29_359
Type: CAZyme
Location: 398874 - 400256 (-)
Type: CAZyme
Location: 398874 - 400256 (-)
Gene ID: Rep_2205_c_29_360
Type: CAZyme
Location: 400277 - 402901 (-)
Type: CAZyme
Location: 400277 - 402901 (-)
Gene ID: Rep_2205_c_29_361
Type: pfam
Location: 403228 - 403779 (-)
Type: pfam
Location: 403228 - 403779 (-)
Gene ID: Rep_2205_c_29_362
Type: CAZyme
Location: 404409 - 405737 (-)
Type: CAZyme
Location: 404409 - 405737 (-)
Gene ID: Rep_2205_c_29_363
Type: CAZyme
Location: 405828 - 407279 (-)
Type: CAZyme
Location: 405828 - 407279 (-)
Gene ID: Rep_2205_c_29_364
Type: TF
Location: 407349 - 408335 (-)
Type: TF
Location: 407349 - 408335 (-)
Gene ID: Rep_2205_c_29_365
Type: TC
Location: 408442 - 409314 (-)
Type: TC
Location: 408442 - 409314 (-)
Gene ID: Rep_2205_c_29_366
Type: TC
Location: 409314 - 410183 (-)
Type: TC
Location: 409314 - 410183 (-)
Gene ID: Rep_2205_c_29_367
Type:
Location: 410246 - 411625 (-)
Type:
Location: 410246 - 411625 (-)
Gene ID: Rep_2205_c_29_368
Type: TC
Location: 411921 - 412874 (+)
Type: TC
Location: 411921 - 412874 (+)
Gene ID: Rep_2205_c_29_369
Type: pfam
Location: 412946 - 413800 (+)
Type: pfam
Location: 412946 - 413800 (+)
Gene ID: Rep_2205_c_29_370
Type: STP
Location: 413826 - 414815 (+)
Type: STP
Location: 413826 - 414815 (+)
Gene ID: Rep_2205_c_29_371
Type: TC
Location: 414896 - 416101 (+)
Type: TC
Location: 414896 - 416101 (+)
Gene ID: Rep_2205_c_29_372
Type: TC
Location: 416124 - 417500 (+)
Type: TC
Location: 416124 - 417500 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
UMGS2037
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.