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Cluster: Rep_2205_CGC40

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_2205_c_29 Rep_2205_c_29_246 254003 256537 - GH2
TC Rep_2205_c_29 Rep_2205_c_29_247 256561 257754 - 1.A.1.24.5
pfam Rep_2205_c_29 Rep_2205_c_29_248 257909 258112 - DUF378
CAZyme Rep_2205_c_29 Rep_2205_c_29_249 258204 260624 - GH3
TF Rep_2205_c_29 Rep_2205_c_29_250 260659 261663 - LacI
STP Rep_2205_c_29 Rep_2205_c_29_251 261887 263515 - SBP_bac_1
TC Rep_2205_c_29 Rep_2205_c_29_252 263629 264549 - 3.A.1.1.29
TC Rep_2205_c_29 Rep_2205_c_29_253 264584 266029 - 3.A.1.1.10
STP Rep_2205_c_29 Rep_2205_c_29_254 266249 268294 - HATPase_c | HisKA | Response_reg
TC Rep_2205_c_29 Rep_2205_c_29_255 268515 269168 + 1.C.113.1.3
STP Rep_2205_c_29 Rep_2205_c_29_256 269251 270552 - Aminotran_1_2
CAZyme Rep_2205_c_29 Rep_2205_c_29_257 270672 272489 - GT2
pfam Rep_2205_c_29 Rep_2205_c_29_258 272516 273649 - Aminotran_5 | Beta_elim_lyase
CAZyme Rep_2205_c_29 Rep_2205_c_29_259 273666 275789 - GH3
Gene ID: Rep_2205_c_29_246
Type: CAZyme
Location: 254003 - 256537 (-)
Gene ID: Rep_2205_c_29_247
Type: TC
Location: 256561 - 257754 (-)
Gene ID: Rep_2205_c_29_248
Type: pfam
Location: 257909 - 258112 (-)
Gene ID: Rep_2205_c_29_249
Type: CAZyme
Location: 258204 - 260624 (-)
Gene ID: Rep_2205_c_29_250
Type: TF
Location: 260659 - 261663 (-)
Gene ID: Rep_2205_c_29_251
Type: STP
Location: 261887 - 263515 (-)
Gene ID: Rep_2205_c_29_252
Type: TC
Location: 263629 - 264549 (-)
Gene ID: Rep_2205_c_29_253
Type: TC
Location: 264584 - 266029 (-)
Gene ID: Rep_2205_c_29_254
Type: STP
Location: 266249 - 268294 (-)
Gene ID: Rep_2205_c_29_255
Type: TC
Location: 268515 - 269168 (+)
Gene ID: Rep_2205_c_29_256
Type: STP
Location: 269251 - 270552 (-)
Gene ID: Rep_2205_c_29_257
Type: CAZyme
Location: 270672 - 272489 (-)
Gene ID: Rep_2205_c_29_258
Type: pfam
Location: 272516 - 273649 (-)
Gene ID: Rep_2205_c_29_259
Type: CAZyme
Location: 273666 - 275789 (-)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacillota_A
→
Class
Clostridia
→
Order
Lachnospirales
→
Family
Lachnospiraceae
→
Genus
UMGS2037
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_2205_c_29_256 vegan > omnivore 1.53825 0.00863

🧭 Explore Read Mapping of CGC

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