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Cluster: Rep_2205_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_2205_c_0 Rep_2205_c_0_111 122438 124621 - 1.B.52.2.2
TC Rep_2205_c_0 Rep_2205_c_0_112 124779 126434 - 2.A.53.3.11
pfam Rep_2205_c_0 Rep_2205_c_0_113 126648 127724 + UxuA
pfam Rep_2205_c_0 Rep_2205_c_0_114 127803 129410 + Mannitol_dh | Mannitol_dh_C
TC Rep_2205_c_0 Rep_2205_c_0_115 129417 130781 - 2.A.66.1.28
TC Rep_2205_c_0 Rep_2205_c_0_116 130786 131991 - 2.A.86.1.8
STP Rep_2205_c_0 Rep_2205_c_0_117 131998 133215 - Fer4 | Fer4
pfam Rep_2205_c_0 Rep_2205_c_0_118 134170 134805 - Hydrolase | HAD_2
CAZyme Rep_2205_c_0 Rep_2205_c_0_119 134953 136650 - GH3
pfam Rep_2205_c_0 Rep_2205_c_0_120 136659 137825 - MFS_1 | MFS_1
TC Rep_2205_c_0 Rep_2205_c_0_121 137832 138719 - 3.A.1.1.29
TC Rep_2205_c_0 Rep_2205_c_0_122 138732 139637 - 3.A.1.1.9
Gene ID: Rep_2205_c_0_111
Type: TC
Location: 122438 - 124621 (-)
Gene ID: Rep_2205_c_0_112
Type: TC
Location: 124779 - 126434 (-)
Gene ID: Rep_2205_c_0_113
Type: pfam
Location: 126648 - 127724 (+)
Gene ID: Rep_2205_c_0_114
Type: pfam
Location: 127803 - 129410 (+)
Gene ID: Rep_2205_c_0_115
Type: TC
Location: 129417 - 130781 (-)
Gene ID: Rep_2205_c_0_116
Type: TC
Location: 130786 - 131991 (-)
Gene ID: Rep_2205_c_0_117
Type: STP
Location: 131998 - 133215 (-)
Gene ID: Rep_2205_c_0_118
Type: pfam
Location: 134170 - 134805 (-)
Gene ID: Rep_2205_c_0_119
Type: CAZyme
Location: 134953 - 136650 (-)
Gene ID: Rep_2205_c_0_120
Type: pfam
Location: 136659 - 137825 (-)
Gene ID: Rep_2205_c_0_121
Type: TC
Location: 137832 - 138719 (-)
Gene ID: Rep_2205_c_0_122
Type: TC
Location: 138732 - 139637 (-)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacillota_A
→
Class
Clostridia
→
Order
Lachnospirales
→
Family
Lachnospiraceae
→
Genus
UMGS2037
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_2205_c_0_113 vegetarian > omnivore 1.85368 0.01548
Rep_2205_c_0_113 vegetarian > vegan 1.56067 0.01057

🧭 Explore Read Mapping of CGC

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