Cluster: Rep_2205_CGC31
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_2205
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_2205_c_23 | Rep_2205_c_23_238 | 259219 | 261483 | - | GH3 |
| TC | Rep_2205_c_23 | Rep_2205_c_23_239 | 261483 | 262910 | - | 2.A.1.3.17 |
| TC | Rep_2205_c_23 | Rep_2205_c_23_240 | 262922 | 263800 | - | 3.A.1.1.29 |
| TC | Rep_2205_c_23 | Rep_2205_c_23_241 | 263819 | 264787 | - | 3.A.1.1.25 |
| TC | Rep_2205_c_23 | Rep_2205_c_23_242 | 265013 | 266704 | + | 9.B.33.1.2 |
Gene ID: Rep_2205_c_23_238
Type: CAZyme
Location: 259219 - 261483 (-)
Type: CAZyme
Location: 259219 - 261483 (-)
Gene ID: Rep_2205_c_23_239
Type: TC
Location: 261483 - 262910 (-)
Type: TC
Location: 261483 - 262910 (-)
Gene ID: Rep_2205_c_23_240
Type: TC
Location: 262922 - 263800 (-)
Type: TC
Location: 262922 - 263800 (-)
Gene ID: Rep_2205_c_23_241
Type: TC
Location: 263819 - 264787 (-)
Type: TC
Location: 263819 - 264787 (-)
Gene ID: Rep_2205_c_23_242
Type: TC
Location: 265013 - 266704 (+)
Type: TC
Location: 265013 - 266704 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
UMGS2037
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_2205_c_23_238 | vegetarian > vegan | 8.54075 | 0.01057 |
| Rep_2205_c_23_239 | vegetarian > vegan | 7.66763 | 0.01057 |
| Rep_2205_c_23_241 | vegetarian > vegan | 15.90650 | 0.01057 |
| Rep_2205_c_23_242 | vegetarian > vegan | 5.36474 | 0.01057 |