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Cluster: Rep_2197_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_2197_c_13 Rep_2197_c_13_16 15252 17120 + 3.A.1.111.2
TC Rep_2197_c_13 Rep_2197_c_13_17 17104 18888 + 3.A.1.111.2
pfam Rep_2197_c_13 Rep_2197_c_13_18 18890 19993 - DNA_pol_B_exo1 | DNA_pol_B_exo2 | RNase_H_2
TC Rep_2197_c_13 Rep_2197_c_13_19 20125 21441 + 3.D.6.1.2
TC Rep_2197_c_13 Rep_2197_c_13_20 21454 22389 + 3.D.6.1.2
TC Rep_2197_c_13 Rep_2197_c_13_21 22379 23032 + 3.D.6.1.2
TC Rep_2197_c_13 Rep_2197_c_13_22 23035 23931 + 3.D.6.1.2
TC Rep_2197_c_13 Rep_2197_c_13_23 23932 24516 + 3.D.6.1.2
TC Rep_2197_c_13 Rep_2197_c_13_24 24530 25321 + 3.D.6.1.1
CAZyme Rep_2197_c_13 Rep_2197_c_13_25 25384 26472 + GH25
Gene ID: Rep_2197_c_13_16
Type: TC
Location: 15252 - 17120 (+)
Gene ID: Rep_2197_c_13_17
Type: TC
Location: 17104 - 18888 (+)
Gene ID: Rep_2197_c_13_18
Type: pfam
Location: 18890 - 19993 (-)
Gene ID: Rep_2197_c_13_19
Type: TC
Location: 20125 - 21441 (+)
Gene ID: Rep_2197_c_13_20
Type: TC
Location: 21454 - 22389 (+)
Gene ID: Rep_2197_c_13_21
Type: TC
Location: 22379 - 23032 (+)
Gene ID: Rep_2197_c_13_22
Type: TC
Location: 23035 - 23931 (+)
Gene ID: Rep_2197_c_13_23
Type: TC
Location: 23932 - 24516 (+)
Gene ID: Rep_2197_c_13_24
Type: TC
Location: 24530 - 25321 (+)
Gene ID: Rep_2197_c_13_25
Type: CAZyme
Location: 25384 - 26472 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacillota_A
→
Class
Clostridia
→
Order
Lachnospirales
→
Family
Lachnospiraceae
→
Genus
CAG-510
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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