Cluster: Rep_2197_CGC38
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 3
- Substrate:
- Genome ID: Rep_2197
- CGC Family ID: CGCFAM_00122
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_2197_c_73 | Rep_2197_c_73_49 | 54282 | 54977 | - | 3.A.1.134.7 |
| pfam | Rep_2197_c_73 | Rep_2197_c_73_50 | 55002 | 55388 | - | DUF3021 |
| TF | Rep_2197_c_73 | Rep_2197_c_73_51 | 55385 | 55834 | - | LytTR |
| CAZyme | Rep_2197_c_73 | Rep_2197_c_73_52 | 56017 | 57762 | - | GH154 |
| CAZyme | Rep_2197_c_73 | Rep_2197_c_73_53 | 58002 | 59183 | - | GH88 |
| TC | Rep_2197_c_73 | Rep_2197_c_73_54 | 59216 | 60055 | - | 3.A.1.1.11 |
| pfam | Rep_2197_c_73 | Rep_2197_c_73_55 | 60121 | 60924 | - | DUF7402 |
| TC | Rep_2197_c_73 | Rep_2197_c_73_56 | 60924 | 62027 | - | 3.A.1.1.20 |
| STP | Rep_2197_c_73 | Rep_2197_c_73_57 | 62067 | 63461 | - | SBP_bac_1 |
| TC | Rep_2197_c_73 | Rep_2197_c_73_58 | 63762 | 65594 | + | 8.A.59.2.1 |
| TF | Rep_2197_c_73 | Rep_2197_c_73_59 | 65608 | 67236 | + | HTH_AraC | HTH_AraC |
| CAZyme | Rep_2197_c_73 | Rep_2197_c_73_60 | 67273 | 69099 | + | PL33_1 |
Gene ID: Rep_2197_c_73_49
Type: TC
Location: 54282 - 54977 (-)
Type: TC
Location: 54282 - 54977 (-)
Gene ID: Rep_2197_c_73_50
Type: pfam
Location: 55002 - 55388 (-)
Type: pfam
Location: 55002 - 55388 (-)
Gene ID: Rep_2197_c_73_51
Type: TF
Location: 55385 - 55834 (-)
Type: TF
Location: 55385 - 55834 (-)
Gene ID: Rep_2197_c_73_52
Type: CAZyme
Location: 56017 - 57762 (-)
Type: CAZyme
Location: 56017 - 57762 (-)
Gene ID: Rep_2197_c_73_53
Type: CAZyme
Location: 58002 - 59183 (-)
Type: CAZyme
Location: 58002 - 59183 (-)
Gene ID: Rep_2197_c_73_54
Type: TC
Location: 59216 - 60055 (-)
Type: TC
Location: 59216 - 60055 (-)
Gene ID: Rep_2197_c_73_55
Type: pfam
Location: 60121 - 60924 (-)
Type: pfam
Location: 60121 - 60924 (-)
Gene ID: Rep_2197_c_73_56
Type: TC
Location: 60924 - 62027 (-)
Type: TC
Location: 60924 - 62027 (-)
Gene ID: Rep_2197_c_73_57
Type: STP
Location: 62067 - 63461 (-)
Type: STP
Location: 62067 - 63461 (-)
Gene ID: Rep_2197_c_73_58
Type: TC
Location: 63762 - 65594 (+)
Type: TC
Location: 63762 - 65594 (+)
Gene ID: Rep_2197_c_73_59
Type: TF
Location: 65608 - 67236 (+)
Type: TF
Location: 65608 - 67236 (+)
Gene ID: Rep_2197_c_73_60
Type: CAZyme
Location: 67273 - 69099 (+)
Type: CAZyme
Location: 67273 - 69099 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
CAG-510
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_2197_c_73_54 | vegetarian > omnivore | 1.14728 | 0.00878 |