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Cluster: Rep_2197_CGC22

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_2197_c_54 Rep_2197_c_54_34 40399 41391 + 3.A.1.1.11
pfam Rep_2197_c_54 Rep_2197_c_54_35 41446 43293 + CBM65_1 | CBM65_1 | CBM65_1
STP Rep_2197_c_54 Rep_2197_c_54_36 43320 44861 + SBP_bac_1
CAZyme Rep_2197_c_54 Rep_2197_c_54_37 44957 45979 + GH130_2
TF Rep_2197_c_54 Rep_2197_c_54_38 46118 47155 + LacI
pfam Rep_2197_c_54 Rep_2197_c_54_39 47152 48348 + GlcNAc_2-epim
CAZyme Rep_2197_c_54 Rep_2197_c_54_40 48350 49525 + GH130_1
CAZyme Rep_2197_c_54 Rep_2197_c_54_41 49532 50749 + CBM35inCE17 | CE17
CAZyme Rep_2197_c_54 Rep_2197_c_54_42 51027 53420 + GH94
TC Rep_2197_c_54 Rep_2197_c_54_43 53482 54327 + 1.A.16.2.4
Gene ID: Rep_2197_c_54_34
Type: TC
Location: 40399 - 41391 (+)
Gene ID: Rep_2197_c_54_35
Type: pfam
Location: 41446 - 43293 (+)
Gene ID: Rep_2197_c_54_36
Type: STP
Location: 43320 - 44861 (+)
Gene ID: Rep_2197_c_54_37
Type: CAZyme
Location: 44957 - 45979 (+)
Gene ID: Rep_2197_c_54_38
Type: TF
Location: 46118 - 47155 (+)
Gene ID: Rep_2197_c_54_39
Type: pfam
Location: 47152 - 48348 (+)
Gene ID: Rep_2197_c_54_40
Type: CAZyme
Location: 48350 - 49525 (+)
Gene ID: Rep_2197_c_54_41
Type: CAZyme
Location: 49532 - 50749 (+)
Gene ID: Rep_2197_c_54_42
Type: CAZyme
Location: 51027 - 53420 (+)
Gene ID: Rep_2197_c_54_43
Type: TC
Location: 53482 - 54327 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacillota_A
→
Class
Clostridia
→
Order
Lachnospirales
→
Family
Lachnospiraceae
→
Genus
CAG-510
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_2197_c_54_37 vegetarian > vegan 1.05358 0.00863

🧭 Explore Read Mapping of CGC

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