Cluster: Rep_2195_CGC9
🧬 Cluster Details
- Gene Count: 15
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_2195
- CGC Family ID: CGCFAM_11202
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_2195_c_1 | Rep_2195_c_1_251 | 239832 | 241766 | - | 3.A.1.135.5 |
| TC | Rep_2195_c_1 | Rep_2195_c_1_252 | 241766 | 243514 | - | 3.A.1.135.5 |
| TF | Rep_2195_c_1 | Rep_2195_c_1_253 | 243536 | 244018 | - | MarR |
| pfam | Rep_2195_c_1 | Rep_2195_c_1_254 | 244227 | 245138 | + | PseudoU_synth_2 |
| TC | Rep_2195_c_1 | Rep_2195_c_1_255 | 245155 | 247005 | - | 3.A.1.120.6 |
| pfam | Rep_2195_c_1 | Rep_2195_c_1_256 | 247011 | 247514 | - | GreA_GreB | GreA_GreB_N |
| TC | Rep_2195_c_1 | Rep_2195_c_1_257 | 247570 | 248406 | - | 1.A.16.1.3 |
| pfam | Rep_2195_c_1 | Rep_2195_c_1_258 | 248580 | 249002 | - | ATP-synt_DE | ATP-synt_DE_N |
| TC | Rep_2195_c_1 | Rep_2195_c_1_259 | 249002 | 250390 | - | 3.A.2.1.5 |
| TC | Rep_2195_c_1 | Rep_2195_c_1_260 | 250383 | 251276 | - | 3.A.2.1.5 |
| TC | Rep_2195_c_1 | Rep_2195_c_1_261 | 251321 | 253339 | - | 3.A.2.1.6 |
| pfam | Rep_2195_c_1 | Rep_2195_c_1_262 | 253336 | 253821 | - | ATP-synt_B |
| pfam | Rep_2195_c_1 | Rep_2195_c_1_263 | 253843 | 254067 | - | ATP-synt_C |
| TC | Rep_2195_c_1 | Rep_2195_c_1_264 | 254117 | 254803 | - | 3.A.2.1.5 |
| CAZyme | Rep_2195_c_1 | Rep_2195_c_1_265 | 255037 | 259602 | - | CBM83 | GH13_41 |
Gene ID: Rep_2195_c_1_251
Type: TC
Location: 239832 - 241766 (-)
Type: TC
Location: 239832 - 241766 (-)
Gene ID: Rep_2195_c_1_252
Type: TC
Location: 241766 - 243514 (-)
Type: TC
Location: 241766 - 243514 (-)
Gene ID: Rep_2195_c_1_253
Type: TF
Location: 243536 - 244018 (-)
Type: TF
Location: 243536 - 244018 (-)
Gene ID: Rep_2195_c_1_254
Type: pfam
Location: 244227 - 245138 (+)
Type: pfam
Location: 244227 - 245138 (+)
Gene ID: Rep_2195_c_1_255
Type: TC
Location: 245155 - 247005 (-)
Type: TC
Location: 245155 - 247005 (-)
Gene ID: Rep_2195_c_1_256
Type: pfam
Location: 247011 - 247514 (-)
Type: pfam
Location: 247011 - 247514 (-)
Gene ID: Rep_2195_c_1_257
Type: TC
Location: 247570 - 248406 (-)
Type: TC
Location: 247570 - 248406 (-)
Gene ID: Rep_2195_c_1_258
Type: pfam
Location: 248580 - 249002 (-)
Type: pfam
Location: 248580 - 249002 (-)
Gene ID: Rep_2195_c_1_259
Type: TC
Location: 249002 - 250390 (-)
Type: TC
Location: 249002 - 250390 (-)
Gene ID: Rep_2195_c_1_260
Type: TC
Location: 250383 - 251276 (-)
Type: TC
Location: 250383 - 251276 (-)
Gene ID: Rep_2195_c_1_261
Type: TC
Location: 251321 - 253339 (-)
Type: TC
Location: 251321 - 253339 (-)
Gene ID: Rep_2195_c_1_262
Type: pfam
Location: 253336 - 253821 (-)
Type: pfam
Location: 253336 - 253821 (-)
Gene ID: Rep_2195_c_1_263
Type: pfam
Location: 253843 - 254067 (-)
Type: pfam
Location: 253843 - 254067 (-)
Gene ID: Rep_2195_c_1_264
Type: TC
Location: 254117 - 254803 (-)
Type: TC
Location: 254117 - 254803 (-)
Gene ID: Rep_2195_c_1_265
Type: CAZyme
Location: 255037 - 259602 (-)
Type: CAZyme
Location: 255037 - 259602 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
COE1
Species
COE1 sp900753305
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.