Cluster: Rep_2195_CGC62
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_2195
- CGC Family ID: CGCFAM_04049
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_2195_c_49 | Rep_2195_c_49_1 | 99 | 1226 | + | GH27 |
| NULL(UNKNOWN) | Rep_2195_c_49 | Rep_2195_c_49_2 | 1226 | 1423 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TF | Rep_2195_c_49 | Rep_2195_c_49_3 | 1548 | 2585 | + | LacI |
| TC | Rep_2195_c_49 | Rep_2195_c_49_4 | 2858 | 3781 | + | 3.A.1.1.29 |
| TC | Rep_2195_c_49 | Rep_2195_c_49_5 | 3794 | 4723 | + | 3.A.1.1.29 |
| pfam | Rep_2195_c_49 | Rep_2195_c_49_6 | 4796 | 6571 | + | SBP_bac_1 |
| CAZyme | Rep_2195_c_49 | Rep_2195_c_49_7 | 6697 | 8652 | + | GH120 |
Gene ID: Rep_2195_c_49_1
Type: CAZyme
Location: 99 - 1226 (+)
Type: CAZyme
Location: 99 - 1226 (+)
Gene ID: Rep_2195_c_49_2
Type:
Location: 1226 - 1423 (+)
Type:
Location: 1226 - 1423 (+)
Gene ID: Rep_2195_c_49_3
Type: TF
Location: 1548 - 2585 (+)
Type: TF
Location: 1548 - 2585 (+)
Gene ID: Rep_2195_c_49_4
Type: TC
Location: 2858 - 3781 (+)
Type: TC
Location: 2858 - 3781 (+)
Gene ID: Rep_2195_c_49_5
Type: TC
Location: 3794 - 4723 (+)
Type: TC
Location: 3794 - 4723 (+)
Gene ID: Rep_2195_c_49_6
Type: pfam
Location: 4796 - 6571 (+)
Type: pfam
Location: 4796 - 6571 (+)
Gene ID: Rep_2195_c_49_7
Type: CAZyme
Location: 6697 - 8652 (+)
Type: CAZyme
Location: 6697 - 8652 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
COE1
Species
COE1 sp900753305
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_2195_c_49_1 | vegetarian > vegan | 2.64807 | 0.01287 |
| Rep_2195_c_49_2 | vegetarian > vegan | 1.69714 | 0.01287 |
| Rep_2195_c_49_3 | vegetarian > vegan | 1.60677 | 0.01287 |
| Rep_2195_c_49_4 | vegetarian > vegan | 1.41462 | 0.01287 |
| Rep_2195_c_49_5 | vegetarian > vegan | 1.60973 | 0.01287 |
| Rep_2195_c_49_6 | vegetarian > vegan | 1.37025 | 0.01287 |
| Rep_2195_c_49_7 | vegetarian > vegan | 1.66279 | 0.01287 |