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Cluster: Rep_2195_CGC60

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_2195_c_42 Rep_2195_c_42_6 6821 8509 + 2.A.114.1.3
TC Rep_2195_c_42 Rep_2195_c_42_7 8713 10122 + 2.A.66.1.28
CAZyme Rep_2195_c_42 Rep_2195_c_42_8 10289 11191 + GH43_22
TC Rep_2195_c_42 Rep_2195_c_42_9 11515 11919 + 3.A.1.5.22
TC Rep_2195_c_42 Rep_2195_c_42_10 12127 12990 + 3.A.1.5.20
pfam Rep_2195_c_42 Rep_2195_c_42_11 13013 14758 + FAD_binding_2 | GIDA | DAO | FAD_oxidored | NAD_binding_8
STP Rep_2195_c_42 Rep_2195_c_42_12 14748 15032 + Fer4 | Fer4
TC Rep_2195_c_42 Rep_2195_c_42_13 15094 16422 - 2.A.66.1.37
TF Rep_2195_c_42 Rep_2195_c_42_14 16423 16881 - 0040517
TC Rep_2195_c_42 Rep_2195_c_42_15 16974 18113 - 2.A.98.1.4
Gene ID: Rep_2195_c_42_6
Type: TC
Location: 6821 - 8509 (+)
Gene ID: Rep_2195_c_42_7
Type: TC
Location: 8713 - 10122 (+)
Gene ID: Rep_2195_c_42_8
Type: CAZyme
Location: 10289 - 11191 (+)
Gene ID: Rep_2195_c_42_9
Type: TC
Location: 11515 - 11919 (+)
Gene ID: Rep_2195_c_42_10
Type: TC
Location: 12127 - 12990 (+)
Gene ID: Rep_2195_c_42_11
Type: pfam
Location: 13013 - 14758 (+)
Gene ID: Rep_2195_c_42_12
Type: STP
Location: 14748 - 15032 (+)
Gene ID: Rep_2195_c_42_13
Type: TC
Location: 15094 - 16422 (-)
Gene ID: Rep_2195_c_42_14
Type: TF
Location: 16423 - 16881 (-)
Gene ID: Rep_2195_c_42_15
Type: TC
Location: 16974 - 18113 (-)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacillota_A
→
Class
Clostridia
→
Order
Lachnospirales
→
Family
Lachnospiraceae
→
Genus
COE1
→
Species
COE1 sp900753305

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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