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Cluster: Rep_2195_CGC6

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_2195_c_0 Rep_2195_c_0_162 176155 177513 - 2.A.66.1.33
pfam Rep_2195_c_0 Rep_2195_c_0_163 177581 178498 - SUFBD_core
TC Rep_2195_c_0 Rep_2195_c_0_164 178491 179219 - 3.A.1.25.6
pfam Rep_2195_c_0 Rep_2195_c_0_165 179298 181115 - tRNA-synt_2 | tRNA_anti-codon | GAD
pfam Rep_2195_c_0 Rep_2195_c_0_166 181164 182423 - tRNA-synt_His
CAZyme Rep_2195_c_0 Rep_2195_c_0_167 182545 184539 - GH31_4
TF Rep_2195_c_0 Rep_2195_c_0_168 184680 185558 + HTH_AraC | HTH_AraC
TC Rep_2195_c_0 Rep_2195_c_0_169 185580 187391 - 1.B.52.2.1
Gene ID: Rep_2195_c_0_162
Type: TC
Location: 176155 - 177513 (-)
Gene ID: Rep_2195_c_0_163
Type: pfam
Location: 177581 - 178498 (-)
Gene ID: Rep_2195_c_0_164
Type: TC
Location: 178491 - 179219 (-)
Gene ID: Rep_2195_c_0_165
Type: pfam
Location: 179298 - 181115 (-)
Gene ID: Rep_2195_c_0_166
Type: pfam
Location: 181164 - 182423 (-)
Gene ID: Rep_2195_c_0_167
Type: CAZyme
Location: 182545 - 184539 (-)
Gene ID: Rep_2195_c_0_168
Type: TF
Location: 184680 - 185558 (+)
Gene ID: Rep_2195_c_0_169
Type: TC
Location: 185580 - 187391 (-)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacillota_A
→
Class
Clostridia
→
Order
Lachnospirales
→
Family
Lachnospiraceae
→
Genus
COE1
→
Species
COE1 sp900753305

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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