Cluster: Rep_2195_CGC57
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_2195
- CGC Family ID: CGCFAM_11212
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_2195_c_36 | Rep_2195_c_36_4 | 2974 | 3744 | - | 3.A.1.3.14 |
| TC | Rep_2195_c_36 | Rep_2195_c_36_5 | 3762 | 4496 | - | 3.A.1.3.13 |
| pfam | Rep_2195_c_36 | Rep_2195_c_36_6 | 4501 | 5019 | - | Acetyltransf_1 | FR47 | Acetyltransf_7 | Acetyltransf_10 |
| peptidase | Rep_2195_c_36 | Rep_2195_c_36_7 | 5058 | 6317 | - | M38.UNW |
| TC | Rep_2195_c_36 | Rep_2195_c_36_8 | 6342 | 7223 | - | 3.A.1.3.13 |
| pfam | Rep_2195_c_36 | Rep_2195_c_36_9 | 7255 | 8484 | - | GST_C_2 |
| CAZyme | Rep_2195_c_36 | Rep_2195_c_36_10 | 8693 | 10261 | - | GH13_44 |
| TC | Rep_2195_c_36 | Rep_2195_c_36_11 | 10298 | 10846 | - | 2.A.51.1.6 |
| TC | Rep_2195_c_36 | Rep_2195_c_36_12 | 10843 | 11397 | - | 2.A.51.1.6 |
| STP | Rep_2195_c_36 | Rep_2195_c_36_13 | 11381 | 11974 | - | NUDIX |
| TC | Rep_2195_c_36 | Rep_2195_c_36_14 | 11974 | 13362 | - | 2.A.66.1.32 |
| TC | Rep_2195_c_36 | Rep_2195_c_36_15 | 13502 | 14830 | + | 3.A.1.121.4 |
Gene ID: Rep_2195_c_36_4
Type: TC
Location: 2974 - 3744 (-)
Type: TC
Location: 2974 - 3744 (-)
Gene ID: Rep_2195_c_36_5
Type: TC
Location: 3762 - 4496 (-)
Type: TC
Location: 3762 - 4496 (-)
Gene ID: Rep_2195_c_36_6
Type: pfam
Location: 4501 - 5019 (-)
Type: pfam
Location: 4501 - 5019 (-)
Gene ID: Rep_2195_c_36_7
Type: peptidase
Location: 5058 - 6317 (-)
Type: peptidase
Location: 5058 - 6317 (-)
Gene ID: Rep_2195_c_36_8
Type: TC
Location: 6342 - 7223 (-)
Type: TC
Location: 6342 - 7223 (-)
Gene ID: Rep_2195_c_36_9
Type: pfam
Location: 7255 - 8484 (-)
Type: pfam
Location: 7255 - 8484 (-)
Gene ID: Rep_2195_c_36_10
Type: CAZyme
Location: 8693 - 10261 (-)
Type: CAZyme
Location: 8693 - 10261 (-)
Gene ID: Rep_2195_c_36_11
Type: TC
Location: 10298 - 10846 (-)
Type: TC
Location: 10298 - 10846 (-)
Gene ID: Rep_2195_c_36_12
Type: TC
Location: 10843 - 11397 (-)
Type: TC
Location: 10843 - 11397 (-)
Gene ID: Rep_2195_c_36_13
Type: STP
Location: 11381 - 11974 (-)
Type: STP
Location: 11381 - 11974 (-)
Gene ID: Rep_2195_c_36_14
Type: TC
Location: 11974 - 13362 (-)
Type: TC
Location: 11974 - 13362 (-)
Gene ID: Rep_2195_c_36_15
Type: TC
Location: 13502 - 14830 (+)
Type: TC
Location: 13502 - 14830 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
COE1
Species
COE1 sp900753305
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.