Cluster: Rep_2195_CGC56
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_2195
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_2195_c_35 | Rep_2195_c_35_6 | 4918 | 5565 | - | 2.A.38.4.4 |
| TC | Rep_2195_c_35 | Rep_2195_c_35_7 | 5581 | 6918 | - | 2.A.38.4.1 |
| NULL(UNKNOWN) | Rep_2195_c_35 | Rep_2195_c_35_8 | 7720 | 7956 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_2195_c_35 | Rep_2195_c_35_9 | 7983 | 9443 | + | CBM34 | GH13_20 |
| NULL(UNKNOWN) | Rep_2195_c_35 | Rep_2195_c_35_10 | 9469 | 9603 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TF | Rep_2195_c_35 | Rep_2195_c_35_11 | 9626 | 10423 | + | LacI |
| TC | Rep_2195_c_35 | Rep_2195_c_35_12 | 10476 | 11747 | - | 2.A.23.1.5 |
Gene ID: Rep_2195_c_35_6
Type: TC
Location: 4918 - 5565 (-)
Type: TC
Location: 4918 - 5565 (-)
Gene ID: Rep_2195_c_35_7
Type: TC
Location: 5581 - 6918 (-)
Type: TC
Location: 5581 - 6918 (-)
Gene ID: Rep_2195_c_35_8
Type:
Location: 7720 - 7956 (+)
Type:
Location: 7720 - 7956 (+)
Gene ID: Rep_2195_c_35_9
Type: CAZyme
Location: 7983 - 9443 (+)
Type: CAZyme
Location: 7983 - 9443 (+)
Gene ID: Rep_2195_c_35_10
Type:
Location: 9469 - 9603 (+)
Type:
Location: 9469 - 9603 (+)
Gene ID: Rep_2195_c_35_11
Type: TF
Location: 9626 - 10423 (+)
Type: TF
Location: 9626 - 10423 (+)
Gene ID: Rep_2195_c_35_12
Type: TC
Location: 10476 - 11747 (-)
Type: TC
Location: 10476 - 11747 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
COE1
Species
COE1 sp900753305
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.