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Cluster: Rep_2195_CGC55

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_2195_c_32 Rep_2195_c_32_14 17463 18800 + GH28
CAZyme Rep_2195_c_32 Rep_2195_c_32_15 18966 21422 + GT35
NULL(UNKNOWN) Rep_2195_c_32 Rep_2195_c_32_16 21625 22173 + NULL(UNKNOWN)
[View Structural Homologs]
STP Rep_2195_c_32 Rep_2195_c_32_17 22284 23465 + Peripla_BP_2
TC Rep_2195_c_32 Rep_2195_c_32_18 23577 24599 + 3.A.1.13.2
TC Rep_2195_c_32 Rep_2195_c_32_19 24599 25729 + 3.A.1.13.2
pfam Rep_2195_c_32 Rep_2195_c_32_20 25823 28111 + Aconitase | Aconitase_C
TC Rep_2195_c_32 Rep_2195_c_32_21 28273 30042 + 2.A.58.2.2
Gene ID: Rep_2195_c_32_14
Type: CAZyme
Location: 17463 - 18800 (+)
Gene ID: Rep_2195_c_32_15
Type: CAZyme
Location: 18966 - 21422 (+)
Gene ID: Rep_2195_c_32_16
Type:
Location: 21625 - 22173 (+)
Gene ID: Rep_2195_c_32_17
Type: STP
Location: 22284 - 23465 (+)
Gene ID: Rep_2195_c_32_18
Type: TC
Location: 23577 - 24599 (+)
Gene ID: Rep_2195_c_32_19
Type: TC
Location: 24599 - 25729 (+)
Gene ID: Rep_2195_c_32_20
Type: pfam
Location: 25823 - 28111 (+)
Gene ID: Rep_2195_c_32_21
Type: TC
Location: 28273 - 30042 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacillota_A
→
Class
Clostridia
→
Order
Lachnospirales
→
Family
Lachnospiraceae
→
Genus
COE1
→
Species
COE1 sp900753305

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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