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Cluster: Rep_2195_CGC54

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_2195_c_29 Rep_2195_c_29_21 17226 18779 + 3.A.1.120.6
TC Rep_2195_c_29 Rep_2195_c_29_22 18825 19787 - 9.B.146.1.3
TC Rep_2195_c_29 Rep_2195_c_29_23 19857 21596 - 3.A.1.135.5
TC Rep_2195_c_29 Rep_2195_c_29_24 21586 23328 - 3.A.1.135.5
TF Rep_2195_c_29 Rep_2195_c_29_25 23461 24786 + GntR
TC Rep_2195_c_29 Rep_2195_c_29_26 24787 26070 - 2.A.49.9.2
NULL(UNKNOWN) Rep_2195_c_29 Rep_2195_c_29_27 26324 26842 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_2195_c_29 Rep_2195_c_29_28 27006 29060 - GH154
CAZyme Rep_2195_c_29 Rep_2195_c_29_29 29097 30221 - GH88
Gene ID: Rep_2195_c_29_21
Type: TC
Location: 17226 - 18779 (+)
Gene ID: Rep_2195_c_29_22
Type: TC
Location: 18825 - 19787 (-)
Gene ID: Rep_2195_c_29_23
Type: TC
Location: 19857 - 21596 (-)
Gene ID: Rep_2195_c_29_24
Type: TC
Location: 21586 - 23328 (-)
Gene ID: Rep_2195_c_29_25
Type: TF
Location: 23461 - 24786 (+)
Gene ID: Rep_2195_c_29_26
Type: TC
Location: 24787 - 26070 (-)
Gene ID: Rep_2195_c_29_27
Type:
Location: 26324 - 26842 (-)
Gene ID: Rep_2195_c_29_28
Type: CAZyme
Location: 27006 - 29060 (-)
Gene ID: Rep_2195_c_29_29
Type: CAZyme
Location: 29097 - 30221 (-)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacillota_A
→
Class
Clostridia
→
Order
Lachnospirales
→
Family
Lachnospiraceae
→
Genus
COE1
→
Species
COE1 sp900753305

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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