Cluster: Rep_2195_CGC52
🧬 Cluster Details
- Gene Count: 14
- CAZyme Count: 5
- Substrate:
- Genome ID: Rep_2195
- CGC Family ID: CGCFAM_11206
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_2195_c_27 | Rep_2195_c_27_9 | 5478 | 7637 | - | GH3 |
| TF | Rep_2195_c_27 | Rep_2195_c_27_10 | 7978 | 8844 | + | HTH_AraC | HTH_AraC |
| CAZyme | Rep_2195_c_27 | Rep_2195_c_27_11 | 8871 | 11291 | - | GH2 |
| TF | Rep_2195_c_27 | Rep_2195_c_27_12 | 11324 | 12298 | - | LacI |
| pfam | Rep_2195_c_27 | Rep_2195_c_27_13 | 12382 | 14046 | - | DUF3502 |
| TC | Rep_2195_c_27 | Rep_2195_c_27_14 | 14076 | 14981 | - | 3.A.1.1.29 |
| TC | Rep_2195_c_27 | Rep_2195_c_27_15 | 14995 | 15939 | - | 3.A.1.1.10 |
| CAZyme | Rep_2195_c_27 | Rep_2195_c_27_16 | 15988 | 17040 | - | GH53 |
| TF | Rep_2195_c_27 | Rep_2195_c_27_17 | 17243 | 18316 | + | HTH_AraC |
| NULL(UNKNOWN) | Rep_2195_c_27 | Rep_2195_c_27_18 | 18362 | 18829 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_2195_c_27 | Rep_2195_c_27_19 | 18956 | 22417 | - | GH2 |
| CAZyme | Rep_2195_c_27 | Rep_2195_c_27_20 | 22437 | 25340 | - | GH115 |
| STP | Rep_2195_c_27 | Rep_2195_c_27_21 | 25458 | 25982 | - | Spo0A_C |
| TC | Rep_2195_c_27 | Rep_2195_c_27_22 | 26200 | 27570 | - | 2.A.66.1.33 |
Gene ID: Rep_2195_c_27_9
Type: CAZyme
Location: 5478 - 7637 (-)
Type: CAZyme
Location: 5478 - 7637 (-)
Gene ID: Rep_2195_c_27_10
Type: TF
Location: 7978 - 8844 (+)
Type: TF
Location: 7978 - 8844 (+)
Gene ID: Rep_2195_c_27_11
Type: CAZyme
Location: 8871 - 11291 (-)
Type: CAZyme
Location: 8871 - 11291 (-)
Gene ID: Rep_2195_c_27_12
Type: TF
Location: 11324 - 12298 (-)
Type: TF
Location: 11324 - 12298 (-)
Gene ID: Rep_2195_c_27_13
Type: pfam
Location: 12382 - 14046 (-)
Type: pfam
Location: 12382 - 14046 (-)
Gene ID: Rep_2195_c_27_14
Type: TC
Location: 14076 - 14981 (-)
Type: TC
Location: 14076 - 14981 (-)
Gene ID: Rep_2195_c_27_15
Type: TC
Location: 14995 - 15939 (-)
Type: TC
Location: 14995 - 15939 (-)
Gene ID: Rep_2195_c_27_16
Type: CAZyme
Location: 15988 - 17040 (-)
Type: CAZyme
Location: 15988 - 17040 (-)
Gene ID: Rep_2195_c_27_17
Type: TF
Location: 17243 - 18316 (+)
Type: TF
Location: 17243 - 18316 (+)
Gene ID: Rep_2195_c_27_18
Type:
Location: 18362 - 18829 (-)
Type:
Location: 18362 - 18829 (-)
Gene ID: Rep_2195_c_27_19
Type: CAZyme
Location: 18956 - 22417 (-)
Type: CAZyme
Location: 18956 - 22417 (-)
Gene ID: Rep_2195_c_27_20
Type: CAZyme
Location: 22437 - 25340 (-)
Type: CAZyme
Location: 22437 - 25340 (-)
Gene ID: Rep_2195_c_27_21
Type: STP
Location: 25458 - 25982 (-)
Type: STP
Location: 25458 - 25982 (-)
Gene ID: Rep_2195_c_27_22
Type: TC
Location: 26200 - 27570 (-)
Type: TC
Location: 26200 - 27570 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
COE1
Species
COE1 sp900753305
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.