Cluster: Rep_2195_CGC50
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_2195
- CGC Family ID: CGCFAM_11207
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_2195_c_24 | Rep_2195_c_24_23 | 16512 | 17252 | - | 3.A.1.5.20 |
| TC | Rep_2195_c_24 | Rep_2195_c_24_24 | 17270 | 18079 | - | 3.A.1.5.1 |
| TC | Rep_2195_c_24 | Rep_2195_c_24_25 | 18099 | 18896 | - | 3.A.1.5.20 |
| TC | Rep_2195_c_24 | Rep_2195_c_24_26 | 18935 | 19879 | - | 3.A.1.5.20 |
| TC | Rep_2195_c_24 | Rep_2195_c_24_27 | 19911 | 21500 | - | 3.A.1.5.11 |
| pfam | Rep_2195_c_24 | Rep_2195_c_24_28 | 21674 | 22126 | - | ATP-cone | Zn_ribbon_NrdR |
| CAZyme | Rep_2195_c_24 | Rep_2195_c_24_29 | 22505 | 24667 | - | GH3 |
Gene ID: Rep_2195_c_24_23
Type: TC
Location: 16512 - 17252 (-)
Type: TC
Location: 16512 - 17252 (-)
Gene ID: Rep_2195_c_24_24
Type: TC
Location: 17270 - 18079 (-)
Type: TC
Location: 17270 - 18079 (-)
Gene ID: Rep_2195_c_24_25
Type: TC
Location: 18099 - 18896 (-)
Type: TC
Location: 18099 - 18896 (-)
Gene ID: Rep_2195_c_24_26
Type: TC
Location: 18935 - 19879 (-)
Type: TC
Location: 18935 - 19879 (-)
Gene ID: Rep_2195_c_24_27
Type: TC
Location: 19911 - 21500 (-)
Type: TC
Location: 19911 - 21500 (-)
Gene ID: Rep_2195_c_24_28
Type: pfam
Location: 21674 - 22126 (-)
Type: pfam
Location: 21674 - 22126 (-)
Gene ID: Rep_2195_c_24_29
Type: CAZyme
Location: 22505 - 24667 (-)
Type: CAZyme
Location: 22505 - 24667 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
COE1
Species
COE1 sp900753305
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.