Cluster: Rep_2195_CGC48
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_2195
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_2195_c_22 | Rep_2195_c_22_10 | 10014 | 11063 | - | 2.A.86.1.3 |
| TC | Rep_2195_c_22 | Rep_2195_c_22_11 | 11117 | 11686 | - | 2.A.107.1.2 |
| TC | Rep_2195_c_22 | Rep_2195_c_22_12 | 12032 | 12682 | - | 3.A.1.25.2 |
| CAZyme | Rep_2195_c_22 | Rep_2195_c_22_13 | 12799 | 14790 | - | GH42 |
| pfam | Rep_2195_c_22 | Rep_2195_c_22_14 | 14814 | 15512 | - | PNP_UDP_1 |
| pfam | Rep_2195_c_22 | Rep_2195_c_22_15 | 15551 | 16036 | - | LuxS |
| TC | Rep_2195_c_22 | Rep_2195_c_22_16 | 16055 | 17398 | - | 2.A.66.1.33 |
Gene ID: Rep_2195_c_22_10
Type: TC
Location: 10014 - 11063 (-)
Type: TC
Location: 10014 - 11063 (-)
Gene ID: Rep_2195_c_22_11
Type: TC
Location: 11117 - 11686 (-)
Type: TC
Location: 11117 - 11686 (-)
Gene ID: Rep_2195_c_22_12
Type: TC
Location: 12032 - 12682 (-)
Type: TC
Location: 12032 - 12682 (-)
Gene ID: Rep_2195_c_22_13
Type: CAZyme
Location: 12799 - 14790 (-)
Type: CAZyme
Location: 12799 - 14790 (-)
Gene ID: Rep_2195_c_22_14
Type: pfam
Location: 14814 - 15512 (-)
Type: pfam
Location: 14814 - 15512 (-)
Gene ID: Rep_2195_c_22_15
Type: pfam
Location: 15551 - 16036 (-)
Type: pfam
Location: 15551 - 16036 (-)
Gene ID: Rep_2195_c_22_16
Type: TC
Location: 16055 - 17398 (-)
Type: TC
Location: 16055 - 17398 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
COE1
Species
COE1 sp900753305
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.