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Cluster: Rep_2195_CGC46

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_2195_c_20 Rep_2195_c_20_24 16408 17742 - 2.A.1.2.88
CAZyme Rep_2195_c_20 Rep_2195_c_20_25 17813 18637 - GH166
STP Rep_2195_c_20 Rep_2195_c_20_26 18705 19868 - Aminotran_1_2
CAZyme Rep_2195_c_20 Rep_2195_c_20_27 19892 21259 - AA4
TC Rep_2195_c_20 Rep_2195_c_20_28 21281 22189 - 3.A.1.24.5
TC Rep_2195_c_20 Rep_2195_c_20_29 22215 22895 - 3.A.1.24.5
TC Rep_2195_c_20 Rep_2195_c_20_30 22876 23928 - 3.A.1.24.3
pfam Rep_2195_c_20 Rep_2195_c_20_31 24050 26101 - DUF2339
TC Rep_2195_c_20 Rep_2195_c_20_32 26159 27541 - 2.A.66.1.32
Gene ID: Rep_2195_c_20_24
Type: TC
Location: 16408 - 17742 (-)
Gene ID: Rep_2195_c_20_25
Type: CAZyme
Location: 17813 - 18637 (-)
Gene ID: Rep_2195_c_20_26
Type: STP
Location: 18705 - 19868 (-)
Gene ID: Rep_2195_c_20_27
Type: CAZyme
Location: 19892 - 21259 (-)
Gene ID: Rep_2195_c_20_28
Type: TC
Location: 21281 - 22189 (-)
Gene ID: Rep_2195_c_20_29
Type: TC
Location: 22215 - 22895 (-)
Gene ID: Rep_2195_c_20_30
Type: TC
Location: 22876 - 23928 (-)
Gene ID: Rep_2195_c_20_31
Type: pfam
Location: 24050 - 26101 (-)
Gene ID: Rep_2195_c_20_32
Type: TC
Location: 26159 - 27541 (-)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacillota_A
→
Class
Clostridia
→
Order
Lachnospirales
→
Family
Lachnospiraceae
→
Genus
COE1
→
Species
COE1 sp900753305

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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