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Cluster: Rep_2195_CGC42

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_2195_c_18 Rep_2195_c_18_3 3335 5350 + GH42
TC Rep_2195_c_18 Rep_2195_c_18_4 5371 6498 + 2.A.45.2.6
pfam Rep_2195_c_18 Rep_2195_c_18_5 6533 8020 + PPK2 | PPK2
TC Rep_2195_c_18 Rep_2195_c_18_6 8054 9409 - 2.A.66.1.33
peptidase Rep_2195_c_18 Rep_2195_c_18_7 9551 10822 + S11.UPW
TC Rep_2195_c_18 Rep_2195_c_18_8 10975 12408 + 3.B.1.1.2
pfam Rep_2195_c_18 Rep_2195_c_18_9 12427 13242 + OAD_gamma
pfam Rep_2195_c_18 Rep_2195_c_18_10 13279 13647 + Biotin_lipoyl
TC Rep_2195_c_18 Rep_2195_c_18_11 13757 14905 + 3.B.1.1.3
TC Rep_2195_c_18 Rep_2195_c_18_12 14962 16398 + 3.B.1.1.6
Gene ID: Rep_2195_c_18_3
Type: CAZyme
Location: 3335 - 5350 (+)
Gene ID: Rep_2195_c_18_4
Type: TC
Location: 5371 - 6498 (+)
Gene ID: Rep_2195_c_18_5
Type: pfam
Location: 6533 - 8020 (+)
Gene ID: Rep_2195_c_18_6
Type: TC
Location: 8054 - 9409 (-)
Gene ID: Rep_2195_c_18_7
Type: peptidase
Location: 9551 - 10822 (+)
Gene ID: Rep_2195_c_18_8
Type: TC
Location: 10975 - 12408 (+)
Gene ID: Rep_2195_c_18_9
Type: pfam
Location: 12427 - 13242 (+)
Gene ID: Rep_2195_c_18_10
Type: pfam
Location: 13279 - 13647 (+)
Gene ID: Rep_2195_c_18_11
Type: TC
Location: 13757 - 14905 (+)
Gene ID: Rep_2195_c_18_12
Type: TC
Location: 14962 - 16398 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacillota_A
→
Class
Clostridia
→
Order
Lachnospirales
→
Family
Lachnospiraceae
→
Genus
COE1
→
Species
COE1 sp900753305

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_2195_c_18_10 vegetarian > vegan 1.16289 0.01287

🧭 Explore Read Mapping of CGC

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