Cluster: Rep_2195_CGC41
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 3
- Substrate:
- Genome ID: Rep_2195
- CGC Family ID: CGCFAM_11203
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_2195_c_15 | Rep_2195_c_15_51 | 53904 | 54974 | - | GH25 |
| pfam | Rep_2195_c_15 | Rep_2195_c_15_52 | 55054 | 55314 | - | DUF6171 |
| CAZyme | Rep_2195_c_15 | Rep_2195_c_15_53 | 55319 | 56824 | - | GH51_1 |
| CAZyme | Rep_2195_c_15 | Rep_2195_c_15_54 | 56964 | 57914 | - | GH43_26 |
| NULL(UNKNOWN) | Rep_2195_c_15 | Rep_2195_c_15_55 | 58265 | 58528 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | Rep_2195_c_15 | Rep_2195_c_15_56 | 58648 | 58764 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | Rep_2195_c_15 | Rep_2195_c_15_57 | 58905 | 59420 | + | 1.B.52.2.2 |
Gene ID: Rep_2195_c_15_51
Type: CAZyme
Location: 53904 - 54974 (-)
Type: CAZyme
Location: 53904 - 54974 (-)
Gene ID: Rep_2195_c_15_52
Type: pfam
Location: 55054 - 55314 (-)
Type: pfam
Location: 55054 - 55314 (-)
Gene ID: Rep_2195_c_15_53
Type: CAZyme
Location: 55319 - 56824 (-)
Type: CAZyme
Location: 55319 - 56824 (-)
Gene ID: Rep_2195_c_15_54
Type: CAZyme
Location: 56964 - 57914 (-)
Type: CAZyme
Location: 56964 - 57914 (-)
Gene ID: Rep_2195_c_15_55
Type:
Location: 58265 - 58528 (+)
Type:
Location: 58265 - 58528 (+)
Gene ID: Rep_2195_c_15_56
Type:
Location: 58648 - 58764 (+)
Type:
Location: 58648 - 58764 (+)
Gene ID: Rep_2195_c_15_57
Type: TC
Location: 58905 - 59420 (+)
Type: TC
Location: 58905 - 59420 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
COE1
Species
COE1 sp900753305
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.