Cluster: Rep_2195_CGC40
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_2195
- CGC Family ID: CGCFAM_11209
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_2195_c_14 | Rep_2195_c_14_30 | 35635 | 37350 | + | 3.A.1.5.25 |
| TC | Rep_2195_c_14 | Rep_2195_c_14_31 | 37485 | 38420 | + | 3.A.1.5.19 |
| TC | Rep_2195_c_14 | Rep_2195_c_14_32 | 38417 | 39466 | + | 3.A.1.5.19 |
| TC | Rep_2195_c_14 | Rep_2195_c_14_33 | 39485 | 40579 | + | 3.A.1.5.25 |
| TC | Rep_2195_c_14 | Rep_2195_c_14_34 | 40563 | 41498 | + | 3.A.1.5.25 |
| peptidase | Rep_2195_c_14 | Rep_2195_c_14_35 | 41925 | 42899 | + | C59.UPW |
| pfam | Rep_2195_c_14 | Rep_2195_c_14_36 | 42965 | 44035 | - | Fe-ADH | Fe-ADH_2 |
| CAZyme | Rep_2195_c_14 | Rep_2195_c_14_37 | 44303 | 46081 | + | CBM34 | GH13_20 |
Gene ID: Rep_2195_c_14_30
Type: TC
Location: 35635 - 37350 (+)
Type: TC
Location: 35635 - 37350 (+)
Gene ID: Rep_2195_c_14_31
Type: TC
Location: 37485 - 38420 (+)
Type: TC
Location: 37485 - 38420 (+)
Gene ID: Rep_2195_c_14_32
Type: TC
Location: 38417 - 39466 (+)
Type: TC
Location: 38417 - 39466 (+)
Gene ID: Rep_2195_c_14_33
Type: TC
Location: 39485 - 40579 (+)
Type: TC
Location: 39485 - 40579 (+)
Gene ID: Rep_2195_c_14_34
Type: TC
Location: 40563 - 41498 (+)
Type: TC
Location: 40563 - 41498 (+)
Gene ID: Rep_2195_c_14_35
Type: peptidase
Location: 41925 - 42899 (+)
Type: peptidase
Location: 41925 - 42899 (+)
Gene ID: Rep_2195_c_14_36
Type: pfam
Location: 42965 - 44035 (-)
Type: pfam
Location: 42965 - 44035 (-)
Gene ID: Rep_2195_c_14_37
Type: CAZyme
Location: 44303 - 46081 (+)
Type: CAZyme
Location: 44303 - 46081 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
COE1
Species
COE1 sp900753305
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_2195_c_14_30 | vegetarian > omnivore | 1.52252 | 0.00918 |
| Rep_2195_c_14_30 | vegetarian > vegan | 1.01976 | 0.01287 |
| Rep_2195_c_14_31 | vegan > omnivore | 1.08167 | 0.04413 |
| Rep_2195_c_14_31 | vegetarian > omnivore | 2.91624 | 0.00918 |
| Rep_2195_c_14_31 | vegetarian > vegan | 1.83457 | 0.01287 |
| Rep_2195_c_14_33 | vegetarian > omnivore | 1.04136 | 0.03761 |