Cluster: Rep_2195_CGC35
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 3
- Substrate:
- Genome ID: Rep_2195
- CGC Family ID: CGCFAM_00419
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_2195_c_10 | Rep_2195_c_10_47 | 46811 | 47677 | - | 3.A.1.1.13 |
| TC | Rep_2195_c_10 | Rep_2195_c_10_48 | 47681 | 48595 | - | 3.A.1.1.4 |
| NULL(UNKNOWN) | Rep_2195_c_10 | Rep_2195_c_10_49 | 48713 | 50131 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_2195_c_10 | Rep_2195_c_10_50 | 50258 | 52672 | - | GH94 |
| CAZyme | Rep_2195_c_10 | Rep_2195_c_10_51 | 52928 | 56347 | - | CBM4 | CBM4 | CBM4 | GH16_3 |
| TF | Rep_2195_c_10 | Rep_2195_c_10_52 | 56512 | 57252 | + | HTH_AraC | HTH_AraC |
| CAZyme | Rep_2195_c_10 | Rep_2195_c_10_53 | 57272 | 59971 | - | GH94 |
Gene ID: Rep_2195_c_10_47
Type: TC
Location: 46811 - 47677 (-)
Type: TC
Location: 46811 - 47677 (-)
Gene ID: Rep_2195_c_10_48
Type: TC
Location: 47681 - 48595 (-)
Type: TC
Location: 47681 - 48595 (-)
Gene ID: Rep_2195_c_10_49
Type:
Location: 48713 - 50131 (-)
Type:
Location: 48713 - 50131 (-)
Gene ID: Rep_2195_c_10_50
Type: CAZyme
Location: 50258 - 52672 (-)
Type: CAZyme
Location: 50258 - 52672 (-)
Gene ID: Rep_2195_c_10_51
Type: CAZyme
Location: 52928 - 56347 (-)
Type: CAZyme
Location: 52928 - 56347 (-)
Gene ID: Rep_2195_c_10_52
Type: TF
Location: 56512 - 57252 (+)
Type: TF
Location: 56512 - 57252 (+)
Gene ID: Rep_2195_c_10_53
Type: CAZyme
Location: 57272 - 59971 (-)
Type: CAZyme
Location: 57272 - 59971 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
COE1
Species
COE1 sp900753305
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.