Cluster: Rep_2195_CGC33
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_2195
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_2195_c_7 | Rep_2195_c_7_32 | 33104 | 34165 | + | 9.A.23.1.1 |
| pfam | Rep_2195_c_7 | Rep_2195_c_7_33 | 34212 | 34718 | - | QueT |
| STP | Rep_2195_c_7 | Rep_2195_c_7_34 | 34897 | 35910 | + | Peripla_BP_1 |
| TC | Rep_2195_c_7 | Rep_2195_c_7_35 | 35900 | 37369 | + | 8.A.59.2.1 |
| TF | Rep_2195_c_7 | Rep_2195_c_7_36 | 37406 | 39004 | + | HTH_AraC | HTH_AraC |
| TC | Rep_2195_c_7 | Rep_2195_c_7_37 | 39017 | 40048 | + | 3.A.1.2.4 |
| TC | Rep_2195_c_7 | Rep_2195_c_7_38 | 40241 | 41401 | + | 3.A.1.2.5 |
| TC | Rep_2195_c_7 | Rep_2195_c_7_39 | 41461 | 42999 | + | 3.A.1.2.5 |
| TC | Rep_2195_c_7 | Rep_2195_c_7_40 | 43025 | 44179 | + | 3.A.1.2.5 |
| pfam | Rep_2195_c_7 | Rep_2195_c_7_41 | 44251 | 44655 | - | SseB |
| CAZyme | Rep_2195_c_7 | Rep_2195_c_7_42 | 44846 | 46471 | + | GH30_5 |
| TC | Rep_2195_c_7 | Rep_2195_c_7_43 | 46672 | 48027 | + | 2.A.45.2.2 |
| TC | Rep_2195_c_7 | Rep_2195_c_7_44 | 48044 | 48634 | + | 2.A.115.2.14 |
Gene ID: Rep_2195_c_7_32
Type: TC
Location: 33104 - 34165 (+)
Type: TC
Location: 33104 - 34165 (+)
Gene ID: Rep_2195_c_7_33
Type: pfam
Location: 34212 - 34718 (-)
Type: pfam
Location: 34212 - 34718 (-)
Gene ID: Rep_2195_c_7_34
Type: STP
Location: 34897 - 35910 (+)
Type: STP
Location: 34897 - 35910 (+)
Gene ID: Rep_2195_c_7_35
Type: TC
Location: 35900 - 37369 (+)
Type: TC
Location: 35900 - 37369 (+)
Gene ID: Rep_2195_c_7_36
Type: TF
Location: 37406 - 39004 (+)
Type: TF
Location: 37406 - 39004 (+)
Gene ID: Rep_2195_c_7_37
Type: TC
Location: 39017 - 40048 (+)
Type: TC
Location: 39017 - 40048 (+)
Gene ID: Rep_2195_c_7_38
Type: TC
Location: 40241 - 41401 (+)
Type: TC
Location: 40241 - 41401 (+)
Gene ID: Rep_2195_c_7_39
Type: TC
Location: 41461 - 42999 (+)
Type: TC
Location: 41461 - 42999 (+)
Gene ID: Rep_2195_c_7_40
Type: TC
Location: 43025 - 44179 (+)
Type: TC
Location: 43025 - 44179 (+)
Gene ID: Rep_2195_c_7_41
Type: pfam
Location: 44251 - 44655 (-)
Type: pfam
Location: 44251 - 44655 (-)
Gene ID: Rep_2195_c_7_42
Type: CAZyme
Location: 44846 - 46471 (+)
Type: CAZyme
Location: 44846 - 46471 (+)
Gene ID: Rep_2195_c_7_43
Type: TC
Location: 46672 - 48027 (+)
Type: TC
Location: 46672 - 48027 (+)
Gene ID: Rep_2195_c_7_44
Type: TC
Location: 48044 - 48634 (+)
Type: TC
Location: 48044 - 48634 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
COE1
Species
COE1 sp900753305
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.