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Cluster: Rep_2195_CGC25

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_2195_c_5 Rep_2195_c_5_55 58557 59951 + 1.A.26.1.3
STP Rep_2195_c_5 Rep_2195_c_5_56 60097 60885 + HD
STP Rep_2195_c_5 Rep_2195_c_5_57 60913 62199 + ACT
CAZyme Rep_2195_c_5 Rep_2195_c_5_58 62230 64626 + GH51_2
STP Rep_2195_c_5 Rep_2195_c_5_59 64629 65207 - TetR_N
pfam Rep_2195_c_5 Rep_2195_c_5_60 65381 66250 + DegV | FakA-like_C
TC Rep_2195_c_5 Rep_2195_c_5_61 66296 68395 - 1.B.52.2.1
TC Rep_2195_c_5 Rep_2195_c_5_62 68727 69740 + 3.A.1.24.2
TC Rep_2195_c_5 Rep_2195_c_5_63 69730 70392 + 3.A.1.24.5
TC Rep_2195_c_5 Rep_2195_c_5_64 70445 71335 + 3.A.1.24.2
Gene ID: Rep_2195_c_5_55
Type: TC
Location: 58557 - 59951 (+)
Gene ID: Rep_2195_c_5_56
Type: STP
Location: 60097 - 60885 (+)
Gene ID: Rep_2195_c_5_57
Type: STP
Location: 60913 - 62199 (+)
Gene ID: Rep_2195_c_5_58
Type: CAZyme
Location: 62230 - 64626 (+)
Gene ID: Rep_2195_c_5_59
Type: STP
Location: 64629 - 65207 (-)
Gene ID: Rep_2195_c_5_60
Type: pfam
Location: 65381 - 66250 (+)
Gene ID: Rep_2195_c_5_61
Type: TC
Location: 66296 - 68395 (-)
Gene ID: Rep_2195_c_5_62
Type: TC
Location: 68727 - 69740 (+)
Gene ID: Rep_2195_c_5_63
Type: TC
Location: 69730 - 70392 (+)
Gene ID: Rep_2195_c_5_64
Type: TC
Location: 70445 - 71335 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacillota_A
→
Class
Clostridia
→
Order
Lachnospirales
→
Family
Lachnospiraceae
→
Genus
COE1
→
Species
COE1 sp900753305

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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