Cluster: Rep_2195_CGC24
🧬 Cluster Details
- Gene Count: 16
- CAZyme Count: 4
- Substrate:
- Genome ID: Rep_2195
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_2195_c_5 | Rep_2195_c_5_30 | 25036 | 27111 | + | GH127 |
| TF | Rep_2195_c_5 | Rep_2195_c_5_31 | 27112 | 27957 | - | HTH_AraC | HTH_AraC |
| CAZyme | Rep_2195_c_5 | Rep_2195_c_5_32 | 28070 | 29365 | + | GH27 |
| TF | Rep_2195_c_5 | Rep_2195_c_5_33 | 29408 | 30262 | - | HTH_AraC | HTH_AraC |
| STP | Rep_2195_c_5 | Rep_2195_c_5_34 | 30475 | 31038 | + | SBP_bac_1 |
| TC | Rep_2195_c_5 | Rep_2195_c_5_35 | 30995 | 31486 | + | 3.A.1.1.10 |
| TC | Rep_2195_c_5 | Rep_2195_c_5_36 | 31530 | 32192 | + | 3.A.1.1.10 |
| NULL(UNKNOWN) | Rep_2195_c_5 | Rep_2195_c_5_37 | 32212 | 32901 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | Rep_2195_c_5 | Rep_2195_c_5_38 | 32888 | 33478 | - | 2.A.88.6.1 |
| pfam | Rep_2195_c_5 | Rep_2195_c_5_39 | 33493 | 34473 | - | IU_nuc_hydro |
| STP | Rep_2195_c_5 | Rep_2195_c_5_40 | 34627 | 35193 | - | TetR_N |
| TC | Rep_2195_c_5 | Rep_2195_c_5_41 | 35276 | 36643 | + | 2.A.66.1.32 |
| CAZyme | Rep_2195_c_5 | Rep_2195_c_5_42 | 36709 | 37776 | + | GT111 |
| STP | Rep_2195_c_5 | Rep_2195_c_5_43 | 37803 | 39974 | + | HATPase_c | HisKA | Response_reg |
| pfam | Rep_2195_c_5 | Rep_2195_c_5_44 | 39971 | 40702 | - | His_Phos_1 |
| CAZyme | Rep_2195_c_5 | Rep_2195_c_5_45 | 40871 | 43090 | + | GH35 |
Gene ID: Rep_2195_c_5_30
Type: CAZyme
Location: 25036 - 27111 (+)
Type: CAZyme
Location: 25036 - 27111 (+)
Gene ID: Rep_2195_c_5_31
Type: TF
Location: 27112 - 27957 (-)
Type: TF
Location: 27112 - 27957 (-)
Gene ID: Rep_2195_c_5_32
Type: CAZyme
Location: 28070 - 29365 (+)
Type: CAZyme
Location: 28070 - 29365 (+)
Gene ID: Rep_2195_c_5_33
Type: TF
Location: 29408 - 30262 (-)
Type: TF
Location: 29408 - 30262 (-)
Gene ID: Rep_2195_c_5_34
Type: STP
Location: 30475 - 31038 (+)
Type: STP
Location: 30475 - 31038 (+)
Gene ID: Rep_2195_c_5_35
Type: TC
Location: 30995 - 31486 (+)
Type: TC
Location: 30995 - 31486 (+)
Gene ID: Rep_2195_c_5_36
Type: TC
Location: 31530 - 32192 (+)
Type: TC
Location: 31530 - 32192 (+)
Gene ID: Rep_2195_c_5_37
Type:
Location: 32212 - 32901 (-)
Type:
Location: 32212 - 32901 (-)
Gene ID: Rep_2195_c_5_38
Type: TC
Location: 32888 - 33478 (-)
Type: TC
Location: 32888 - 33478 (-)
Gene ID: Rep_2195_c_5_39
Type: pfam
Location: 33493 - 34473 (-)
Type: pfam
Location: 33493 - 34473 (-)
Gene ID: Rep_2195_c_5_40
Type: STP
Location: 34627 - 35193 (-)
Type: STP
Location: 34627 - 35193 (-)
Gene ID: Rep_2195_c_5_41
Type: TC
Location: 35276 - 36643 (+)
Type: TC
Location: 35276 - 36643 (+)
Gene ID: Rep_2195_c_5_42
Type: CAZyme
Location: 36709 - 37776 (+)
Type: CAZyme
Location: 36709 - 37776 (+)
Gene ID: Rep_2195_c_5_43
Type: STP
Location: 37803 - 39974 (+)
Type: STP
Location: 37803 - 39974 (+)
Gene ID: Rep_2195_c_5_44
Type: pfam
Location: 39971 - 40702 (-)
Type: pfam
Location: 39971 - 40702 (-)
Gene ID: Rep_2195_c_5_45
Type: CAZyme
Location: 40871 - 43090 (+)
Type: CAZyme
Location: 40871 - 43090 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
COE1
Species
COE1 sp900753305
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.