Cluster: Rep_2195_CGC22
🧬 Cluster Details
- Gene Count: 16
- CAZyme Count: 7
- Substrate:
- Genome ID: Rep_2195
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_2195_c_4 | Rep_2195_c_4_59 | 62689 | 65001 | - | GH1 |
| CAZyme | Rep_2195_c_4 | Rep_2195_c_4_60 | 65052 | 66152 | - | CE2 |
| CAZyme | Rep_2195_c_4 | Rep_2195_c_4_61 | 66186 | 67214 | - | GH130_2 |
| CAZyme | Rep_2195_c_4 | Rep_2195_c_4_62 | 67476 | 68594 | - | CBM35inCE17 | CE17 |
| CAZyme | Rep_2195_c_4 | Rep_2195_c_4_63 | 68617 | 69786 | - | GH130_1 |
| pfam | Rep_2195_c_4 | Rep_2195_c_4_64 | 69804 | 71003 | - | GlcNAc_2-epim |
| TC | Rep_2195_c_4 | Rep_2195_c_4_65 | 71024 | 71869 | - | 3.A.1.1.18 |
| TC | Rep_2195_c_4 | Rep_2195_c_4_66 | 71866 | 72867 | - | 3.A.1.1.11 |
| STP | Rep_2195_c_4 | Rep_2195_c_4_67 | 73013 | 74446 | - | SBP_bac_1 |
| TF | Rep_2195_c_4 | Rep_2195_c_4_68 | 74804 | 75820 | - | LacI |
| CAZyme | Rep_2195_c_4 | Rep_2195_c_4_69 | 75904 | 78093 | - | GH36 |
| CAZyme | Rep_2195_c_4 | Rep_2195_c_4_70 | 78182 | 80809 | - | GH2 |
| TF | Rep_2195_c_4 | Rep_2195_c_4_71 | 80842 | 81864 | - | LacI |
| STP | Rep_2195_c_4 | Rep_2195_c_4_72 | 81999 | 82628 | - | NUDIX |
| TC | Rep_2195_c_4 | Rep_2195_c_4_73 | 82711 | 83850 | + | 8.A.59.4.1 |
| TC | Rep_2195_c_4 | Rep_2195_c_4_74 | 84196 | 85473 | - | 1.A.11.2.3 |
Gene ID: Rep_2195_c_4_59
Type: CAZyme
Location: 62689 - 65001 (-)
Type: CAZyme
Location: 62689 - 65001 (-)
Gene ID: Rep_2195_c_4_60
Type: CAZyme
Location: 65052 - 66152 (-)
Type: CAZyme
Location: 65052 - 66152 (-)
Gene ID: Rep_2195_c_4_61
Type: CAZyme
Location: 66186 - 67214 (-)
Type: CAZyme
Location: 66186 - 67214 (-)
Gene ID: Rep_2195_c_4_62
Type: CAZyme
Location: 67476 - 68594 (-)
Type: CAZyme
Location: 67476 - 68594 (-)
Gene ID: Rep_2195_c_4_63
Type: CAZyme
Location: 68617 - 69786 (-)
Type: CAZyme
Location: 68617 - 69786 (-)
Gene ID: Rep_2195_c_4_64
Type: pfam
Location: 69804 - 71003 (-)
Type: pfam
Location: 69804 - 71003 (-)
Gene ID: Rep_2195_c_4_65
Type: TC
Location: 71024 - 71869 (-)
Type: TC
Location: 71024 - 71869 (-)
Gene ID: Rep_2195_c_4_66
Type: TC
Location: 71866 - 72867 (-)
Type: TC
Location: 71866 - 72867 (-)
Gene ID: Rep_2195_c_4_67
Type: STP
Location: 73013 - 74446 (-)
Type: STP
Location: 73013 - 74446 (-)
Gene ID: Rep_2195_c_4_68
Type: TF
Location: 74804 - 75820 (-)
Type: TF
Location: 74804 - 75820 (-)
Gene ID: Rep_2195_c_4_69
Type: CAZyme
Location: 75904 - 78093 (-)
Type: CAZyme
Location: 75904 - 78093 (-)
Gene ID: Rep_2195_c_4_70
Type: CAZyme
Location: 78182 - 80809 (-)
Type: CAZyme
Location: 78182 - 80809 (-)
Gene ID: Rep_2195_c_4_71
Type: TF
Location: 80842 - 81864 (-)
Type: TF
Location: 80842 - 81864 (-)
Gene ID: Rep_2195_c_4_72
Type: STP
Location: 81999 - 82628 (-)
Type: STP
Location: 81999 - 82628 (-)
Gene ID: Rep_2195_c_4_73
Type: TC
Location: 82711 - 83850 (+)
Type: TC
Location: 82711 - 83850 (+)
Gene ID: Rep_2195_c_4_74
Type: TC
Location: 84196 - 85473 (-)
Type: TC
Location: 84196 - 85473 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
COE1
Species
COE1 sp900753305
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.