Cluster: Rep_2195_CGC13
🧬 Cluster Details
- Gene Count: 19
- CAZyme Count: 8
- Substrate:
- Genome ID: Rep_2195
- CGC Family ID: CGCFAM_00168
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_2195_c_2 | Rep_2195_c_2_150 | 188005 | 188940 | - | GT2 |
| pfam | Rep_2195_c_2 | Rep_2195_c_2_151 | 189000 | 190532 | - | LytR_cpsA_psr |
| TC | Rep_2195_c_2 | Rep_2195_c_2_152 | 190546 | 191955 | - | 9.B.18.1.1 |
| CAZyme | Rep_2195_c_2 | Rep_2195_c_2_153 | 192029 | 192997 | - | GT2 |
| CAZyme | Rep_2195_c_2 | Rep_2195_c_2_154 | 193020 | 194381 | - | GT2 |
| pfam | Rep_2195_c_2 | Rep_2195_c_2_155 | 194404 | 194859 | - | GtrA_DPMS_TM |
| pfam | Rep_2195_c_2 | Rep_2195_c_2_156 | 194956 | 196680 | - | PGM_PMM_I | PGM_PMM_II | PGM_PMM_III |
| CAZyme | Rep_2195_c_2 | Rep_2195_c_2_157 | 196867 | 198867 | - | GT2 | GT2 |
| CAZyme | Rep_2195_c_2 | Rep_2195_c_2_158 | 198821 | 200812 | - | GT2 |
| CAZyme | Rep_2195_c_2 | Rep_2195_c_2_159 | 200820 | 202889 | - | GT2 |
| pfam | Rep_2195_c_2 | Rep_2195_c_2_160 | 202919 | 204958 | - | RrnaAD | PCMT | Methyltransf_11 |
| TC | Rep_2195_c_2 | Rep_2195_c_2_161 | 204970 | 206295 | - | 3.A.1.103.6 |
| TC | Rep_2195_c_2 | Rep_2195_c_2_162 | 206363 | 207355 | - | 3.A.1.104.1 |
| pfam | Rep_2195_c_2 | Rep_2195_c_2_163 | 207366 | 207917 | - | dTDP_sugar_isom |
| CAZyme | Rep_2195_c_2 | Rep_2195_c_2_164 | 207946 | 209232 | - | GH25 |
| pfam | Rep_2195_c_2 | Rep_2195_c_2_165 | 209222 | 210091 | - | NTP_transferase | NTP_transf_3 |
| pfam | Rep_2195_c_2 | Rep_2195_c_2_166 | 210183 | 211259 | - | 3Beta_HSD | Epimerase | Polysacc_synt_2 | RmlD_sub_bind | NAD_binding_4 | KR | GDP_Man_Dehyd |
| CAZyme | Rep_2195_c_2 | Rep_2195_c_2_167 | 211330 | 214686 | - | GH25 |
| TC | Rep_2195_c_2 | Rep_2195_c_2_168 | 214801 | 215139 | - | 2.A.7.33.5 |
Gene ID: Rep_2195_c_2_150
Type: CAZyme
Location: 188005 - 188940 (-)
Type: CAZyme
Location: 188005 - 188940 (-)
Gene ID: Rep_2195_c_2_151
Type: pfam
Location: 189000 - 190532 (-)
Type: pfam
Location: 189000 - 190532 (-)
Gene ID: Rep_2195_c_2_152
Type: TC
Location: 190546 - 191955 (-)
Type: TC
Location: 190546 - 191955 (-)
Gene ID: Rep_2195_c_2_153
Type: CAZyme
Location: 192029 - 192997 (-)
Type: CAZyme
Location: 192029 - 192997 (-)
Gene ID: Rep_2195_c_2_154
Type: CAZyme
Location: 193020 - 194381 (-)
Type: CAZyme
Location: 193020 - 194381 (-)
Gene ID: Rep_2195_c_2_155
Type: pfam
Location: 194404 - 194859 (-)
Type: pfam
Location: 194404 - 194859 (-)
Gene ID: Rep_2195_c_2_156
Type: pfam
Location: 194956 - 196680 (-)
Type: pfam
Location: 194956 - 196680 (-)
Gene ID: Rep_2195_c_2_157
Type: CAZyme
Location: 196867 - 198867 (-)
Type: CAZyme
Location: 196867 - 198867 (-)
Gene ID: Rep_2195_c_2_158
Type: CAZyme
Location: 198821 - 200812 (-)
Type: CAZyme
Location: 198821 - 200812 (-)
Gene ID: Rep_2195_c_2_159
Type: CAZyme
Location: 200820 - 202889 (-)
Type: CAZyme
Location: 200820 - 202889 (-)
Gene ID: Rep_2195_c_2_160
Type: pfam
Location: 202919 - 204958 (-)
Type: pfam
Location: 202919 - 204958 (-)
Gene ID: Rep_2195_c_2_161
Type: TC
Location: 204970 - 206295 (-)
Type: TC
Location: 204970 - 206295 (-)
Gene ID: Rep_2195_c_2_162
Type: TC
Location: 206363 - 207355 (-)
Type: TC
Location: 206363 - 207355 (-)
Gene ID: Rep_2195_c_2_163
Type: pfam
Location: 207366 - 207917 (-)
Type: pfam
Location: 207366 - 207917 (-)
Gene ID: Rep_2195_c_2_164
Type: CAZyme
Location: 207946 - 209232 (-)
Type: CAZyme
Location: 207946 - 209232 (-)
Gene ID: Rep_2195_c_2_165
Type: pfam
Location: 209222 - 210091 (-)
Type: pfam
Location: 209222 - 210091 (-)
Gene ID: Rep_2195_c_2_166
Type: pfam
Location: 210183 - 211259 (-)
Type: pfam
Location: 210183 - 211259 (-)
Gene ID: Rep_2195_c_2_167
Type: CAZyme
Location: 211330 - 214686 (-)
Type: CAZyme
Location: 211330 - 214686 (-)
Gene ID: Rep_2195_c_2_168
Type: TC
Location: 214801 - 215139 (-)
Type: TC
Location: 214801 - 215139 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
COE1
Species
COE1 sp900753305
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.