Cluster: Rep_2195_CGC11
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_2195
- CGC Family ID: CGCFAM_08604
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_2195_c_2 | Rep_2195_c_2_29 | 38144 | 39346 | - | 3.A.1.122.2 |
| TC | Rep_2195_c_2 | Rep_2195_c_2_30 | 39339 | 40043 | - | 3.A.1.122.2 |
| pfam | Rep_2195_c_2 | Rep_2195_c_2_31 | 40062 | 41576 | - | CusB_dom_1 | HlyD_3 | Biotin_lipoyl_2 | HlyD_D23 |
| CAZyme | Rep_2195_c_2 | Rep_2195_c_2_32 | 41734 | 43956 | - | GH95 |
| NULL(UNKNOWN) | Rep_2195_c_2 | Rep_2195_c_2_33 | 43977 | 44177 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_2195_c_2 | Rep_2195_c_2_34 | 44509 | 45750 | - | GH32 |
Gene ID: Rep_2195_c_2_29
Type: TC
Location: 38144 - 39346 (-)
Type: TC
Location: 38144 - 39346 (-)
Gene ID: Rep_2195_c_2_30
Type: TC
Location: 39339 - 40043 (-)
Type: TC
Location: 39339 - 40043 (-)
Gene ID: Rep_2195_c_2_31
Type: pfam
Location: 40062 - 41576 (-)
Type: pfam
Location: 40062 - 41576 (-)
Gene ID: Rep_2195_c_2_32
Type: CAZyme
Location: 41734 - 43956 (-)
Type: CAZyme
Location: 41734 - 43956 (-)
Gene ID: Rep_2195_c_2_33
Type:
Location: 43977 - 44177 (-)
Type:
Location: 43977 - 44177 (-)
Gene ID: Rep_2195_c_2_34
Type: CAZyme
Location: 44509 - 45750 (-)
Type: CAZyme
Location: 44509 - 45750 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
COE1
Species
COE1 sp900753305
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.