Cluster: Rep_2195_CGC1
🧬 Cluster Details
- Gene Count: 15
- CAZyme Count: 7
- Substrate:
- Genome ID: Rep_2195
- CGC Family ID: CGCFAM_11210
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_2195_c_0 | Rep_2195_c_0_79 | 83306 | 84544 | - | 3.A.1.103.5 |
| TC | Rep_2195_c_0 | Rep_2195_c_0_80 | 84577 | 86154 | - | 4.C.1.1.4 |
| pfam | Rep_2195_c_0 | Rep_2195_c_0_81 | 86158 | 86397 | - | PP-binding |
| pfam | Rep_2195_c_0 | Rep_2195_c_0_82 | 86394 | 87458 | - | Acyl_transf_3 |
| CAZyme | Rep_2195_c_0 | Rep_2195_c_0_83 | 87467 | 88600 | - | GT4 |
| CAZyme | Rep_2195_c_0 | Rep_2195_c_0_84 | 88618 | 89574 | - | GT2 |
| TC | Rep_2195_c_0 | Rep_2195_c_0_85 | 89604 | 90446 | - | 3.A.1.103.5 |
| CAZyme | Rep_2195_c_0 | Rep_2195_c_0_86 | 90464 | 91453 | - | GT2 |
| TC | Rep_2195_c_0 | Rep_2195_c_0_87 | 91508 | 92932 | - | 9.B.18.1.2 |
| pfam | Rep_2195_c_0 | Rep_2195_c_0_88 | 93152 | 94123 | - | Peptidase_S9 | Abhydrolase_1 | DLH | DUF676 | BAAT_C | Hydrolase_4 | Abhydrolase_6 |
| pfam | Rep_2195_c_0 | Rep_2195_c_0_89 | 94132 | 95019 | - | PS_pyruv_trans |
| CAZyme | Rep_2195_c_0 | Rep_2195_c_0_90 | 95043 | 96128 | - | GT2 |
| CAZyme | Rep_2195_c_0 | Rep_2195_c_0_91 | 96175 | 97140 | - | GT2 |
| CAZyme | Rep_2195_c_0 | Rep_2195_c_0_92 | 97140 | 98117 | - | GT2 |
| CAZyme | Rep_2195_c_0 | Rep_2195_c_0_93 | 98129 | 99040 | - | GT14 |
Gene ID: Rep_2195_c_0_79
Type: TC
Location: 83306 - 84544 (-)
Type: TC
Location: 83306 - 84544 (-)
Gene ID: Rep_2195_c_0_80
Type: TC
Location: 84577 - 86154 (-)
Type: TC
Location: 84577 - 86154 (-)
Gene ID: Rep_2195_c_0_81
Type: pfam
Location: 86158 - 86397 (-)
Type: pfam
Location: 86158 - 86397 (-)
Gene ID: Rep_2195_c_0_82
Type: pfam
Location: 86394 - 87458 (-)
Type: pfam
Location: 86394 - 87458 (-)
Gene ID: Rep_2195_c_0_83
Type: CAZyme
Location: 87467 - 88600 (-)
Type: CAZyme
Location: 87467 - 88600 (-)
Gene ID: Rep_2195_c_0_84
Type: CAZyme
Location: 88618 - 89574 (-)
Type: CAZyme
Location: 88618 - 89574 (-)
Gene ID: Rep_2195_c_0_85
Type: TC
Location: 89604 - 90446 (-)
Type: TC
Location: 89604 - 90446 (-)
Gene ID: Rep_2195_c_0_86
Type: CAZyme
Location: 90464 - 91453 (-)
Type: CAZyme
Location: 90464 - 91453 (-)
Gene ID: Rep_2195_c_0_87
Type: TC
Location: 91508 - 92932 (-)
Type: TC
Location: 91508 - 92932 (-)
Gene ID: Rep_2195_c_0_88
Type: pfam
Location: 93152 - 94123 (-)
Type: pfam
Location: 93152 - 94123 (-)
Gene ID: Rep_2195_c_0_89
Type: pfam
Location: 94132 - 95019 (-)
Type: pfam
Location: 94132 - 95019 (-)
Gene ID: Rep_2195_c_0_90
Type: CAZyme
Location: 95043 - 96128 (-)
Type: CAZyme
Location: 95043 - 96128 (-)
Gene ID: Rep_2195_c_0_91
Type: CAZyme
Location: 96175 - 97140 (-)
Type: CAZyme
Location: 96175 - 97140 (-)
Gene ID: Rep_2195_c_0_92
Type: CAZyme
Location: 97140 - 98117 (-)
Type: CAZyme
Location: 97140 - 98117 (-)
Gene ID: Rep_2195_c_0_93
Type: CAZyme
Location: 98129 - 99040 (-)
Type: CAZyme
Location: 98129 - 99040 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
COE1
Species
COE1 sp900753305
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.