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Cluster: Rep_2161_CGC9

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_2161_c_109 Rep_2161_c_109_8 12744 13736 + 9.B.157.1.1
TC Rep_2161_c_109 Rep_2161_c_109_9 13752 16013 + 3.A.7.16.1
TC Rep_2161_c_109 Rep_2161_c_109_10 15997 16725 + 3.A.11.1.4
pfam Rep_2161_c_109 Rep_2161_c_109_11 16912 17688 + His_biosynth
CAZyme Rep_2161_c_109 Rep_2161_c_109_12 17720 20014 + CBM4 | GH9
pfam Rep_2161_c_109 Rep_2161_c_109_13 20069 23311 + GtrA_DPMS_TM | YfhO
TC Rep_2161_c_109 Rep_2161_c_109_14 23462 25213 + 2.A.21.9.2
Gene ID: Rep_2161_c_109_8
Type: TC
Location: 12744 - 13736 (+)
Gene ID: Rep_2161_c_109_9
Type: TC
Location: 13752 - 16013 (+)
Gene ID: Rep_2161_c_109_10
Type: TC
Location: 15997 - 16725 (+)
Gene ID: Rep_2161_c_109_11
Type: pfam
Location: 16912 - 17688 (+)
Gene ID: Rep_2161_c_109_12
Type: CAZyme
Location: 17720 - 20014 (+)
Gene ID: Rep_2161_c_109_13
Type: pfam
Location: 20069 - 23311 (+)
Gene ID: Rep_2161_c_109_14
Type: TC
Location: 23462 - 25213 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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