Cluster: Rep_2161_CGC7
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_2161
- CGC Family ID: CGCFAM_01231
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_2161_c_75 | Rep_2161_c_75_2 | 791 | 3235 | - | GT35 |
| pfam | Rep_2161_c_75 | Rep_2161_c_75_3 | 3514 | 4320 | - | DnaJ |
| TC | Rep_2161_c_75 | Rep_2161_c_75_4 | 4317 | 5231 | - | 1.E.12.1.3 |
| NULL(UNKNOWN) | Rep_2161_c_75 | Rep_2161_c_75_5 | 5285 | 5680 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | Rep_2161_c_75 | Rep_2161_c_75_6 | 5696 | 7450 | - | 1.A.33.1.4 |
Gene ID: Rep_2161_c_75_2
Type: CAZyme
Location: 791 - 3235 (-)
Type: CAZyme
Location: 791 - 3235 (-)
Gene ID: Rep_2161_c_75_3
Type: pfam
Location: 3514 - 4320 (-)
Type: pfam
Location: 3514 - 4320 (-)
Gene ID: Rep_2161_c_75_4
Type: TC
Location: 4317 - 5231 (-)
Type: TC
Location: 4317 - 5231 (-)
Gene ID: Rep_2161_c_75_5
Type:
Location: 5285 - 5680 (-)
Type:
Location: 5285 - 5680 (-)
Gene ID: Rep_2161_c_75_6
Type: TC
Location: 5696 - 7450 (-)
Type: TC
Location: 5696 - 7450 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Coprococcus
Species
Coprococcus sp900761435
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_2161_c_75_6 | vegan > omnivore | 1.33808 | 0.03604 |