Cluster: Rep_2161_CGC5
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_2161
- CGC Family ID: CGCFAM_00199
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_2161_c_53 | Rep_2161_c_53_45 | 54024 | 55313 | + | 3.A.1.1.28 |
| TC | Rep_2161_c_53 | Rep_2161_c_53_46 | 55317 | 56213 | + | 3.A.1.1.28 |
| TC | Rep_2161_c_53 | Rep_2161_c_53_47 | 56213 | 57280 | + | 3.A.1.1.28 |
| CAZyme | Rep_2161_c_53 | Rep_2161_c_53_48 | 57429 | 59228 | + | GH13_4 |
| CAZyme | Rep_2161_c_53 | Rep_2161_c_53_49 | 59277 | 61478 | + | GH36 |
Gene ID: Rep_2161_c_53_45
Type: TC
Location: 54024 - 55313 (+)
Type: TC
Location: 54024 - 55313 (+)
Gene ID: Rep_2161_c_53_46
Type: TC
Location: 55317 - 56213 (+)
Type: TC
Location: 55317 - 56213 (+)
Gene ID: Rep_2161_c_53_47
Type: TC
Location: 56213 - 57280 (+)
Type: TC
Location: 56213 - 57280 (+)
Gene ID: Rep_2161_c_53_48
Type: CAZyme
Location: 57429 - 59228 (+)
Type: CAZyme
Location: 57429 - 59228 (+)
Gene ID: Rep_2161_c_53_49
Type: CAZyme
Location: 59277 - 61478 (+)
Type: CAZyme
Location: 59277 - 61478 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Coprococcus
Species
Coprococcus sp900761435
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.