Cluster: Rep_2161_CGC13
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_2161
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_2161_c_167 | Rep_2161_c_167_3 | 2336 | 4249 | + | 3.A.16.1.1 |
| CAZyme | Rep_2161_c_167 | Rep_2161_c_167_4 | 4753 | 6858 | + | CBM34 | GH13_39 |
| STP | Rep_2161_c_167 | Rep_2161_c_167_5 | 6953 | 7990 | + | HATPase_c | HisKA |
| pfam | Rep_2161_c_167 | Rep_2161_c_167_6 | 8169 | 10562 | + | FtsX | FtsX |
| TC | Rep_2161_c_167 | Rep_2161_c_167_7 | 10641 | 11324 | + | 3.A.1.125.3 |
| NULL(UNKNOWN) | Rep_2161_c_167 | Rep_2161_c_167_8 | 11354 | 12286 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | Rep_2161_c_167 | Rep_2161_c_167_9 | 12287 | 13570 | + | 3.A.1.122.7 |
Gene ID: Rep_2161_c_167_3
Type: TC
Location: 2336 - 4249 (+)
Type: TC
Location: 2336 - 4249 (+)
Gene ID: Rep_2161_c_167_4
Type: CAZyme
Location: 4753 - 6858 (+)
Type: CAZyme
Location: 4753 - 6858 (+)
Gene ID: Rep_2161_c_167_5
Type: STP
Location: 6953 - 7990 (+)
Type: STP
Location: 6953 - 7990 (+)
Gene ID: Rep_2161_c_167_6
Type: pfam
Location: 8169 - 10562 (+)
Type: pfam
Location: 8169 - 10562 (+)
Gene ID: Rep_2161_c_167_7
Type: TC
Location: 10641 - 11324 (+)
Type: TC
Location: 10641 - 11324 (+)
Gene ID: Rep_2161_c_167_8
Type:
Location: 11354 - 12286 (+)
Type:
Location: 11354 - 12286 (+)
Gene ID: Rep_2161_c_167_9
Type: TC
Location: 12287 - 13570 (+)
Type: TC
Location: 12287 - 13570 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Coprococcus
Species
Coprococcus sp900761435
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.