Cluster: Rep_2161_CGC11
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_2161
- CGC Family ID: CGCFAM_00272
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_2161_c_132 | Rep_2161_c_132_2 | 1223 | 4060 | - | 3.A.1.33.1 |
| pfam | Rep_2161_c_132 | Rep_2161_c_132_3 | 4155 | 6143 | - | Helicase_C | UVR | ResIII | UvrB | UvrB_inter |
| CAZyme | Rep_2161_c_132 | Rep_2161_c_132_4 | 6464 | 9163 | + | GH94 |
| CAZyme | Rep_2161_c_132 | Rep_2161_c_132_5 | 9185 | 11596 | + | GH94 |
Gene ID: Rep_2161_c_132_2
Type: TC
Location: 1223 - 4060 (-)
Type: TC
Location: 1223 - 4060 (-)
Gene ID: Rep_2161_c_132_3
Type: pfam
Location: 4155 - 6143 (-)
Type: pfam
Location: 4155 - 6143 (-)
Gene ID: Rep_2161_c_132_4
Type: CAZyme
Location: 6464 - 9163 (+)
Type: CAZyme
Location: 6464 - 9163 (+)
Gene ID: Rep_2161_c_132_5
Type: CAZyme
Location: 9185 - 11596 (+)
Type: CAZyme
Location: 9185 - 11596 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Coprococcus
Species
Coprococcus sp900761435
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.