Cluster: Rep_2160_CGC9
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_2160
- CGC Family ID: CGCFAM_00011
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_2160_c_0 | Rep_2160_c_0_919 | 1051725 | 1052912 | - | 3.A.1.103.4 |
| TC | Rep_2160_c_0 | Rep_2160_c_0_920 | 1052914 | 1053684 | - | 3.A.1.103.1 |
| pfam | Rep_2160_c_0 | Rep_2160_c_0_921 | 1053686 | 1054522 | - | Epimerase | GDP_Man_Dehyd |
| pfam | Rep_2160_c_0 | Rep_2160_c_0_922 | 1054652 | 1055545 | - | Glycos_transf_2 |
| CAZyme | Rep_2160_c_0 | Rep_2160_c_0_923 | 1055563 | 1056495 | - | GT2 |
| pfam | Rep_2160_c_0 | Rep_2160_c_0_924 | 1056452 | 1056829 | - | DUF2304 |
| CAZyme | Rep_2160_c_0 | Rep_2160_c_0_925 | 1056836 | 1057552 | - | GT2 |
Gene ID: Rep_2160_c_0_919
Type: TC
Location: 1051725 - 1052912 (-)
Type: TC
Location: 1051725 - 1052912 (-)
Gene ID: Rep_2160_c_0_920
Type: TC
Location: 1052914 - 1053684 (-)
Type: TC
Location: 1052914 - 1053684 (-)
Gene ID: Rep_2160_c_0_921
Type: pfam
Location: 1053686 - 1054522 (-)
Type: pfam
Location: 1053686 - 1054522 (-)
Gene ID: Rep_2160_c_0_922
Type: pfam
Location: 1054652 - 1055545 (-)
Type: pfam
Location: 1054652 - 1055545 (-)
Gene ID: Rep_2160_c_0_923
Type: CAZyme
Location: 1055563 - 1056495 (-)
Type: CAZyme
Location: 1055563 - 1056495 (-)
Gene ID: Rep_2160_c_0_924
Type: pfam
Location: 1056452 - 1056829 (-)
Type: pfam
Location: 1056452 - 1056829 (-)
Gene ID: Rep_2160_c_0_925
Type: CAZyme
Location: 1056836 - 1057552 (-)
Type: CAZyme
Location: 1056836 - 1057552 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Coprococcus
Species
Coprococcus sp000154245
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.