Cluster: Rep_2160_CGC7
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_2160
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_2160_c_0 | Rep_2160_c_0_480 | 561471 | 563108 | - | GH13_18 |
| pfam | Rep_2160_c_0 | Rep_2160_c_0_481 | 563133 | 563960 | - | Zeta_toxin |
| CAZyme | Rep_2160_c_0 | Rep_2160_c_0_482 | 564065 | 566242 | - | GH36 |
| TC | Rep_2160_c_0 | Rep_2160_c_0_483 | 566258 | 567142 | - | 3.A.1.1.28 |
| TC | Rep_2160_c_0 | Rep_2160_c_0_484 | 567139 | 568047 | - | 3.A.1.1.28 |
| TC | Rep_2160_c_0 | Rep_2160_c_0_485 | 568050 | 569333 | - | 3.A.1.1.28 |
Gene ID: Rep_2160_c_0_480
Type: CAZyme
Location: 561471 - 563108 (-)
Type: CAZyme
Location: 561471 - 563108 (-)
Gene ID: Rep_2160_c_0_481
Type: pfam
Location: 563133 - 563960 (-)
Type: pfam
Location: 563133 - 563960 (-)
Gene ID: Rep_2160_c_0_482
Type: CAZyme
Location: 564065 - 566242 (-)
Type: CAZyme
Location: 564065 - 566242 (-)
Gene ID: Rep_2160_c_0_483
Type: TC
Location: 566258 - 567142 (-)
Type: TC
Location: 566258 - 567142 (-)
Gene ID: Rep_2160_c_0_484
Type: TC
Location: 567139 - 568047 (-)
Type: TC
Location: 567139 - 568047 (-)
Gene ID: Rep_2160_c_0_485
Type: TC
Location: 568050 - 569333 (-)
Type: TC
Location: 568050 - 569333 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Coprococcus
Species
Coprococcus sp000154245
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.