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Cluster: Rep_2160_CGC6

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_2160_c_0 Rep_2160_c_0_465 538474 540174 - 3.A.1.1.9
TC Rep_2160_c_0 Rep_2160_c_0_466 540225 541100 - 3.A.1.1.27
TC Rep_2160_c_0 Rep_2160_c_0_467 541100 542485 - 3.A.1.1.27
STP Rep_2160_c_0 Rep_2160_c_0_468 542598 543905 - SBP_bac_1
TC Rep_2160_c_0 Rep_2160_c_0_469 544042 545784 - 9.B.33.1.1
TF Rep_2160_c_0 Rep_2160_c_0_470 545777 547294 - HTH_AraC
CAZyme Rep_2160_c_0 Rep_2160_c_0_471 547346 551113 - GH77 | GT35
Gene ID: Rep_2160_c_0_465
Type: TC
Location: 538474 - 540174 (-)
Gene ID: Rep_2160_c_0_466
Type: TC
Location: 540225 - 541100 (-)
Gene ID: Rep_2160_c_0_467
Type: TC
Location: 541100 - 542485 (-)
Gene ID: Rep_2160_c_0_468
Type: STP
Location: 542598 - 543905 (-)
Gene ID: Rep_2160_c_0_469
Type: TC
Location: 544042 - 545784 (-)
Gene ID: Rep_2160_c_0_470
Type: TF
Location: 545777 - 547294 (-)
Gene ID: Rep_2160_c_0_471
Type: CAZyme
Location: 547346 - 551113 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_2160_c_0_469 vegan > omnivore 1.32498 0.02695
Rep_2160_c_0_470 vegan > omnivore 1.68984 0.02695
Rep_2160_c_0_470 vegetarian > omnivore 1.41693 0.01684

🧭 Explore Read Mapping of CGC

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