Cluster: Rep_2160_CGC5
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_2160
- CGC Family ID: CGCFAM_05012
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_2160_c_0 | Rep_2160_c_0_398 | 483603 | 484748 | - | GH3 |
| pfam | Rep_2160_c_0 | Rep_2160_c_0_399 | 484741 | 485478 | - | PseudoU_synth_1 | PseudoU_synth_1 |
| TC | Rep_2160_c_0 | Rep_2160_c_0_400 | 485494 | 486294 | - | 3.A.1.25.4 |
| TC | Rep_2160_c_0 | Rep_2160_c_0_401 | 486403 | 488331 | - | 3.A.1.30.1 |
Gene ID: Rep_2160_c_0_398
Type: CAZyme
Location: 483603 - 484748 (-)
Type: CAZyme
Location: 483603 - 484748 (-)
Gene ID: Rep_2160_c_0_399
Type: pfam
Location: 484741 - 485478 (-)
Type: pfam
Location: 484741 - 485478 (-)
Gene ID: Rep_2160_c_0_400
Type: TC
Location: 485494 - 486294 (-)
Type: TC
Location: 485494 - 486294 (-)
Gene ID: Rep_2160_c_0_401
Type: TC
Location: 486403 - 488331 (-)
Type: TC
Location: 486403 - 488331 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Coprococcus
Species
Coprococcus sp000154245
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_2160_c_0_398 | vegan > omnivore | 1.09872 | 0.02695 |
| Rep_2160_c_0_401 | vegan > omnivore | 1.16903 | 0.02695 |