Cluster: Rep_2160_CGC4
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_2160
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_2160_c_0 | Rep_2160_c_0_368 | 446477 | 447178 | - | 3.A.1.134.11 |
| STP | Rep_2160_c_0 | Rep_2160_c_0_369 | 447279 | 447902 | - | TetR_N |
| TC | Rep_2160_c_0 | Rep_2160_c_0_370 | 448520 | 450757 | - | 9.B.74.1.4 |
| pfam | Rep_2160_c_0 | Rep_2160_c_0_371 | 450778 | 453057 | - | MMPL | MMPL |
| STP | Rep_2160_c_0 | Rep_2160_c_0_372 | 453296 | 453859 | - | TetR_N |
| TC | Rep_2160_c_0 | Rep_2160_c_0_373 | 453957 | 456038 | - | 3.A.3.32.3 |
| pfam | Rep_2160_c_0 | Rep_2160_c_0_374 | 456067 | 456390 | - | DUF6110 |
| TC | Rep_2160_c_0 | Rep_2160_c_0_375 | 456523 | 457854 | - | 2.A.66.1.25 |
| CAZyme | Rep_2160_c_0 | Rep_2160_c_0_376 | 457871 | 458701 | - | GT8 |
| NULL(UNKNOWN) | Rep_2160_c_0 | Rep_2160_c_0_377 | 458942 | 460771 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TF | Rep_2160_c_0 | Rep_2160_c_0_378 | 460996 | 462546 | - | GerE |
| TC | Rep_2160_c_0 | Rep_2160_c_0_379 | 462632 | 463771 | - | 2.A.4.7.6 |
Gene ID: Rep_2160_c_0_368
Type: TC
Location: 446477 - 447178 (-)
Type: TC
Location: 446477 - 447178 (-)
Gene ID: Rep_2160_c_0_369
Type: STP
Location: 447279 - 447902 (-)
Type: STP
Location: 447279 - 447902 (-)
Gene ID: Rep_2160_c_0_370
Type: TC
Location: 448520 - 450757 (-)
Type: TC
Location: 448520 - 450757 (-)
Gene ID: Rep_2160_c_0_371
Type: pfam
Location: 450778 - 453057 (-)
Type: pfam
Location: 450778 - 453057 (-)
Gene ID: Rep_2160_c_0_372
Type: STP
Location: 453296 - 453859 (-)
Type: STP
Location: 453296 - 453859 (-)
Gene ID: Rep_2160_c_0_373
Type: TC
Location: 453957 - 456038 (-)
Type: TC
Location: 453957 - 456038 (-)
Gene ID: Rep_2160_c_0_374
Type: pfam
Location: 456067 - 456390 (-)
Type: pfam
Location: 456067 - 456390 (-)
Gene ID: Rep_2160_c_0_375
Type: TC
Location: 456523 - 457854 (-)
Type: TC
Location: 456523 - 457854 (-)
Gene ID: Rep_2160_c_0_376
Type: CAZyme
Location: 457871 - 458701 (-)
Type: CAZyme
Location: 457871 - 458701 (-)
Gene ID: Rep_2160_c_0_377
Type:
Location: 458942 - 460771 (-)
Type:
Location: 458942 - 460771 (-)
Gene ID: Rep_2160_c_0_378
Type: TF
Location: 460996 - 462546 (-)
Type: TF
Location: 460996 - 462546 (-)
Gene ID: Rep_2160_c_0_379
Type: TC
Location: 462632 - 463771 (-)
Type: TC
Location: 462632 - 463771 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Coprococcus
Species
Coprococcus sp000154245
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_2160_c_0_372 | vegan > omnivore | 1.70877 | 0.02695 |
| Rep_2160_c_0_372 | vegetarian > omnivore | 1.16271 | 0.02148 |
| Rep_2160_c_0_374 | vegan > omnivore | 1.34404 | 0.02695 |
| Rep_2160_c_0_376 | vegan > omnivore | 1.43202 | 0.02695 |
| Rep_2160_c_0_377 | vegan > omnivore | 1.63293 | 0.02695 |
| Rep_2160_c_0_378 | vegan > omnivore | 1.33134 | 0.02695 |
| Rep_2160_c_0_379 | vegan > omnivore | 1.28167 | 0.02695 |
| Rep_2160_c_0_379 | vegetarian > omnivore | 1.46116 | 0.02148 |