dbCAN Logo

Cluster: Rep_2160_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_2160_c_0 Rep_2160_c_0_236 280342 281124 - 2.A.5.5.2
TC Rep_2160_c_0 Rep_2160_c_0_237 281415 282812 - 2.A.22.5.3
TC Rep_2160_c_0 Rep_2160_c_0_238 283003 284391 - 2.A.66.1.34
CAZyme Rep_2160_c_0 Rep_2160_c_0_239 284696 286258 + CE4
pfam Rep_2160_c_0 Rep_2160_c_0_240 286622 287494 - SAICAR_synt
pfam Rep_2160_c_0 Rep_2160_c_0_241 287600 288517 - SUFBD_core
TC Rep_2160_c_0 Rep_2160_c_0_242 288536 289261 - 3.A.1.25.6
Gene ID: Rep_2160_c_0_236
Type: TC
Location: 280342 - 281124 (-)
Gene ID: Rep_2160_c_0_237
Type: TC
Location: 281415 - 282812 (-)
Gene ID: Rep_2160_c_0_238
Type: TC
Location: 283003 - 284391 (-)
Gene ID: Rep_2160_c_0_239
Type: CAZyme
Location: 284696 - 286258 (+)
Gene ID: Rep_2160_c_0_240
Type: pfam
Location: 286622 - 287494 (-)
Gene ID: Rep_2160_c_0_241
Type: pfam
Location: 287600 - 288517 (-)
Gene ID: Rep_2160_c_0_242
Type: TC
Location: 288536 - 289261 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_2160_c_0_238 vegan > omnivore 1.29029 0.02695
Rep_2160_c_0_238 vegetarian > omnivore 1.31239 0.02148

🧭 Explore Read Mapping of CGC

← Back to Cluster List