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Cluster: Rep_2160_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_2160_c_0 Rep_2160_c_0_136 161641 164565 + GT51
pfam Rep_2160_c_0 Rep_2160_c_0_137 164756 165112 - SpoVAC_SpoVAEB
TC Rep_2160_c_0 Rep_2160_c_0_138 165122 166147 - 9.A.11.1.1
TC Rep_2160_c_0 Rep_2160_c_0_139 166345 167646 + 2.A.49.9.2
pfam Rep_2160_c_0 Rep_2160_c_0_140 167901 169571 - VanW | G5
TC Rep_2160_c_0 Rep_2160_c_0_141 169781 170239 - 9.A.11.1.1
TC Rep_2160_c_0 Rep_2160_c_0_142 170291 170713 - 9.A.11.1.1
TC Rep_2160_c_0 Rep_2160_c_0_143 170703 171332 - 9.A.11.1.1
Gene ID: Rep_2160_c_0_136
Type: CAZyme
Location: 161641 - 164565 (+)
Gene ID: Rep_2160_c_0_137
Type: pfam
Location: 164756 - 165112 (-)
Gene ID: Rep_2160_c_0_138
Type: TC
Location: 165122 - 166147 (-)
Gene ID: Rep_2160_c_0_139
Type: TC
Location: 166345 - 167646 (+)
Gene ID: Rep_2160_c_0_140
Type: pfam
Location: 167901 - 169571 (-)
Gene ID: Rep_2160_c_0_141
Type: TC
Location: 169781 - 170239 (-)
Gene ID: Rep_2160_c_0_142
Type: TC
Location: 170291 - 170713 (-)
Gene ID: Rep_2160_c_0_143
Type: TC
Location: 170703 - 171332 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_2160_c_0_141 vegan > omnivore 1.11482 0.02695
Rep_2160_c_0_141 vegetarian > omnivore 1.17321 0.02148

🧭 Explore Read Mapping of CGC

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