Cluster: Rep_2160_CGC19
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_2160
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_2160_c_0 | Rep_2160_c_0_2279 | 2606599 | 2608995 | + | GH94 |
| peptidase | Rep_2160_c_0 | Rep_2160_c_0_2280 | 2609164 | 2609823 | + | S14.UPW |
| pfam | Rep_2160_c_0 | Rep_2160_c_0_2281 | 2609949 | 2610824 | + | BacA |
| TC | Rep_2160_c_0 | Rep_2160_c_0_2282 | 2610851 | 2613553 | + | 3.A.12.1.1 |
Gene ID: Rep_2160_c_0_2279
Type: CAZyme
Location: 2606599 - 2608995 (+)
Type: CAZyme
Location: 2606599 - 2608995 (+)
Gene ID: Rep_2160_c_0_2280
Type: peptidase
Location: 2609164 - 2609823 (+)
Type: peptidase
Location: 2609164 - 2609823 (+)
Gene ID: Rep_2160_c_0_2281
Type: pfam
Location: 2609949 - 2610824 (+)
Type: pfam
Location: 2609949 - 2610824 (+)
Gene ID: Rep_2160_c_0_2282
Type: TC
Location: 2610851 - 2613553 (+)
Type: TC
Location: 2610851 - 2613553 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Coprococcus
Species
Coprococcus sp000154245
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_2160_c_0_2280 | vegan > omnivore | 1.37332 | 0.02695 |
| Rep_2160_c_0_2280 | vegetarian > omnivore | 1.00365 | 0.02148 |