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Cluster: Rep_2160_CGC18

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_2160_c_0 Rep_2160_c_0_1956 2223207 2224442 + GT4
pfam Rep_2160_c_0 Rep_2160_c_0_1957 2224484 2225059 + dTDP_sugar_isom
CAZyme Rep_2160_c_0 Rep_2160_c_0_1958 2225064 2226323 + GT4
CAZyme Rep_2160_c_0 Rep_2160_c_0_1959 2226320 2227483 + GT4
CAZyme Rep_2160_c_0 Rep_2160_c_0_1960 2227470 2228459 + GT2
TC Rep_2160_c_0 Rep_2160_c_0_1961 2228478 2229620 + 9.B.183.1.3
Gene ID: Rep_2160_c_0_1956
Type: CAZyme
Location: 2223207 - 2224442 (+)
Gene ID: Rep_2160_c_0_1957
Type: pfam
Location: 2224484 - 2225059 (+)
Gene ID: Rep_2160_c_0_1958
Type: CAZyme
Location: 2225064 - 2226323 (+)
Gene ID: Rep_2160_c_0_1959
Type: CAZyme
Location: 2226320 - 2227483 (+)
Gene ID: Rep_2160_c_0_1960
Type: CAZyme
Location: 2227470 - 2228459 (+)
Gene ID: Rep_2160_c_0_1961
Type: TC
Location: 2228478 - 2229620 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_2160_c_0_1961 vegetarian > omnivore 1.01764 0.02148

🧭 Explore Read Mapping of CGC

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