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Cluster: Rep_2160_CGC17

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_2160_c_0 Rep_2160_c_0_1946 2213043 2214536 + 9.B.18.1.3
CAZyme Rep_2160_c_0 Rep_2160_c_0_1947 2214537 2215280 + GT2
pfam Rep_2160_c_0 Rep_2160_c_0_1948 2215304 2215495 + RHH_1
CAZyme Rep_2160_c_0 Rep_2160_c_0_1949 2215522 2216271 + GT2
pfam Rep_2160_c_0 Rep_2160_c_0_1950 2216691 2217917 + UDPGP
TC Rep_2160_c_0 Rep_2160_c_0_1951 2218145 2219611 + 9.B.18.1.2
Gene ID: Rep_2160_c_0_1946
Type: TC
Location: 2213043 - 2214536 (+)
Gene ID: Rep_2160_c_0_1947
Type: CAZyme
Location: 2214537 - 2215280 (+)
Gene ID: Rep_2160_c_0_1948
Type: pfam
Location: 2215304 - 2215495 (+)
Gene ID: Rep_2160_c_0_1949
Type: CAZyme
Location: 2215522 - 2216271 (+)
Gene ID: Rep_2160_c_0_1950
Type: pfam
Location: 2216691 - 2217917 (+)
Gene ID: Rep_2160_c_0_1951
Type: TC
Location: 2218145 - 2219611 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_2160_c_0_1947 vegan > omnivore 1.65262 0.02695
Rep_2160_c_0_1947 vegetarian > omnivore 1.41769 0.02148
Rep_2160_c_0_1948 vegan > omnivore 1.61220 0.02695
Rep_2160_c_0_1948 vegetarian > omnivore 1.54273 0.02148
Rep_2160_c_0_1950 vegetarian > omnivore 1.04166 0.02148

🧭 Explore Read Mapping of CGC

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