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Cluster: Rep_2160_CGC16

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_2160_c_0 Rep_2160_c_0_1879 2122188 2123486 + 3.D.10.1.4
pfam Rep_2160_c_0 Rep_2160_c_0_1880 2123600 2124454 + QRPTase_C | QRPTase_N
TF Rep_2160_c_0 Rep_2160_c_0_1881 2124553 2125101 + HTH_11
CAZyme Rep_2160_c_0 Rep_2160_c_0_1882 2125369 2127357 + GH31_1
TC Rep_2160_c_0 Rep_2160_c_0_1883 2128545 2129489 + 2.A.69.3.2
STP Rep_2160_c_0 Rep_2160_c_0_1884 2129602 2130114 + SKI
TC Rep_2160_c_0 Rep_2160_c_0_1885 2130490 2132031 + 2.A.21.2.5
Gene ID: Rep_2160_c_0_1879
Type: TC
Location: 2122188 - 2123486 (+)
Gene ID: Rep_2160_c_0_1880
Type: pfam
Location: 2123600 - 2124454 (+)
Gene ID: Rep_2160_c_0_1881
Type: TF
Location: 2124553 - 2125101 (+)
Gene ID: Rep_2160_c_0_1882
Type: CAZyme
Location: 2125369 - 2127357 (+)
Gene ID: Rep_2160_c_0_1883
Type: TC
Location: 2128545 - 2129489 (+)
Gene ID: Rep_2160_c_0_1884
Type: STP
Location: 2129602 - 2130114 (+)
Gene ID: Rep_2160_c_0_1885
Type: TC
Location: 2130490 - 2132031 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_2160_c_0_1881 vegan > omnivore 1.25893 0.02695
Rep_2160_c_0_1883 vegan > omnivore 1.10536 0.02695
Rep_2160_c_0_1885 vegan > omnivore 1.17300 0.02695
Rep_2160_c_0_1885 vegetarian > omnivore 1.42106 0.02148

🧭 Explore Read Mapping of CGC

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